Results 1 - 20 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 97006 | 0.66 | 0.770291 |
Target: 5'- cCGGCCCgCC-GCC-CGCCGAUAgCUc -3' miRNA: 3'- uGCUGGG-GGuUGGuGCGGCUGUgGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 127743 | 0.66 | 0.770291 |
Target: 5'- uGCGGCCgCCGcaaCAC-CCGGCGCCa- -3' miRNA: 3'- -UGCUGGgGGUug-GUGcGGCUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 115860 | 0.66 | 0.770291 |
Target: 5'- uUGGCCgCCAcGCCaugGCGCCGGCuACCa- -3' miRNA: 3'- uGCUGGgGGU-UGG---UGCGGCUG-UGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 22810 | 0.66 | 0.770291 |
Target: 5'- gGCGGCCCCgGAUCuccggauccaGCCGACggACCg- -3' miRNA: 3'- -UGCUGGGGgUUGGug--------CGGCUG--UGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 107105 | 0.66 | 0.770291 |
Target: 5'- cCGGCCCUCAcCCuuguuuuCGaCCGGCACCc- -3' miRNA: 3'- uGCUGGGGGUuGGu------GC-GGCUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 126423 | 0.66 | 0.769369 |
Target: 5'- -aGGCCCCCGGCCcuGCGgCCaagcuaaGGCGCCc- -3' miRNA: 3'- ugCUGGGGGUUGG--UGC-GG-------CUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 153251 | 0.66 | 0.761018 |
Target: 5'- -gGACCCgCGcGCCGcCGCCGcCGCCUc -3' miRNA: 3'- ugCUGGGgGU-UGGU-GCGGCuGUGGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 3905 | 0.66 | 0.761018 |
Target: 5'- cCGGCCCCgGGCCAcggcucccCGCUGACguACCc- -3' miRNA: 3'- uGCUGGGGgUUGGU--------GCGGCUG--UGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 7182 | 0.66 | 0.761018 |
Target: 5'- -gGGCCCCCGcACCGgGgCGGCgACCa- -3' miRNA: 3'- ugCUGGGGGU-UGGUgCgGCUG-UGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 7780 | 0.66 | 0.761018 |
Target: 5'- cACGACCCaCCGcCCcCGCUGGCgggaGCCa- -3' miRNA: 3'- -UGCUGGG-GGUuGGuGCGGCUG----UGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 21680 | 0.66 | 0.761018 |
Target: 5'- gUGGCCCCCuucGCgAUGCCGcCGCUg- -3' miRNA: 3'- uGCUGGGGGu--UGgUGCGGCuGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 23582 | 0.66 | 0.761018 |
Target: 5'- gGCGGCgCCCCGGCCGaGCCcGC-CCa- -3' miRNA: 3'- -UGCUG-GGGGUUGGUgCGGcUGuGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 61192 | 0.66 | 0.761018 |
Target: 5'- uCGGCCUgcaCCGGCgCGCGCCGgcgguuGCACCa- -3' miRNA: 3'- uGCUGGG---GGUUG-GUGCGGC------UGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 105966 | 0.66 | 0.761018 |
Target: 5'- cAC-ACCCCCAcCCucCGCagCGACGCCUa -3' miRNA: 3'- -UGcUGGGGGUuGGu-GCG--GCUGUGGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 118820 | 0.66 | 0.761018 |
Target: 5'- -gGACCUggggCUcACgCACGCCGGCACCg- -3' miRNA: 3'- ugCUGGG----GGuUG-GUGCGGCUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 11432 | 0.66 | 0.761018 |
Target: 5'- aACG-CCCCCGggguuguaaAUCugGCCGcggggGCGCCUg -3' miRNA: 3'- -UGCuGGGGGU---------UGGugCGGC-----UGUGGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 122869 | 0.66 | 0.761018 |
Target: 5'- gACGACauCCCCGcCCGCuucGCCGACuCCg- -3' miRNA: 3'- -UGCUG--GGGGUuGGUG---CGGCUGuGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 150257 | 0.66 | 0.761018 |
Target: 5'- cCGGCCcuCCCGACCcgcgcGCGUCGgucGCGCCUg -3' miRNA: 3'- uGCUGG--GGGUUGG-----UGCGGC---UGUGGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 150883 | 0.66 | 0.761018 |
Target: 5'- cGCGggucGCCCCCGcACCGcCGCCcccGCGCCg- -3' miRNA: 3'- -UGC----UGGGGGU-UGGU-GCGGc--UGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 62440 | 0.66 | 0.758214 |
Target: 5'- --aGCCCCCGgacgucgccgguggGCCGCGCgaCGGCGCCc- -3' miRNA: 3'- ugcUGGGGGU--------------UGGUGCG--GCUGUGGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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