Results 1 - 20 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5128 | 5' | -57.2 | NC_001798.1 | + | 78964 | 0.66 | 0.891848 |
Target: 5'- gCCGCguccgggggggCGCCuggaaGUCCCCCGAGGGGUuccGCg -3' miRNA: 3'- gGGUG-----------GUGG-----UAGGGGGCUCUCUAc--UG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 86888 | 0.66 | 0.891848 |
Target: 5'- uUCCGCCGCCGggaaCCCCGgcguGGAGcgccgGGCc -3' miRNA: 3'- -GGGUGGUGGUag--GGGGC----UCUCua---CUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 146008 | 0.66 | 0.887858 |
Target: 5'- aCCGCCGCCAcCCCCCaaacagccaaggcgcGGuGGggGGCg -3' miRNA: 3'- gGGUGGUGGUaGGGGG---------------CUcUCuaCUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 34555 | 0.66 | 0.885155 |
Target: 5'- cCCCGgaGCCuggGUCCCCCGGcGGAcGGCu -3' miRNA: 3'- -GGGUggUGG---UAGGGGGCUcUCUaCUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 71092 | 0.66 | 0.885155 |
Target: 5'- gCCCGCgGUCGgcgugcgcgCCCCCGGGGacgcuGAUGGCg -3' miRNA: 3'- -GGGUGgUGGUa--------GGGGGCUCU-----CUACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 77958 | 0.66 | 0.885155 |
Target: 5'- gCUCGCCGCCAUCCaCCGccucggcuGGAGcgcGGCg -3' miRNA: 3'- -GGGUGGUGGUAGGgGGC--------UCUCua-CUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 135114 | 0.66 | 0.884473 |
Target: 5'- gCCACCACCAUccaacuacucgacCCCCCGGcGGccgucgGGCc -3' miRNA: 3'- gGGUGGUGGUA-------------GGGGGCUcUCua----CUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 23817 | 0.66 | 0.884473 |
Target: 5'- gCCgGCCcCCcgCCCCCGGGgcgcgugcuguacGGcgGGCu -3' miRNA: 3'- -GGgUGGuGGuaGGGGGCUC-------------UCuaCUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 14741 | 0.66 | 0.882417 |
Target: 5'- cCCCACCcCCA-CCCCCuaaucccgcucGGGUGGCa -3' miRNA: 3'- -GGGUGGuGGUaGGGGGcuc--------UCUACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 112754 | 0.66 | 0.878245 |
Target: 5'- aCCGCCACguCAUCagCCCGcggGGAGGgcgGACg -3' miRNA: 3'- gGGUGGUG--GUAGg-GGGC---UCUCUa--CUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 90628 | 0.66 | 0.878245 |
Target: 5'- cUCCACCACC-UCCgCCuCGAagugguccgcgGAGAUGcCg -3' miRNA: 3'- -GGGUGGUGGuAGG-GG-GCU-----------CUCUACuG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 54221 | 0.66 | 0.878245 |
Target: 5'- aCCGCCGCCccccuGUUCCCCac--GAUGACc -3' miRNA: 3'- gGGUGGUGG-----UAGGGGGcucuCUACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 28236 | 0.66 | 0.87613 |
Target: 5'- gCCGCCGCCugcCCCCCGccgccgccgcgcaaGGAGcgcgGGCc -3' miRNA: 3'- gGGUGGUGGua-GGGGGC--------------UCUCua--CUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 153446 | 0.66 | 0.871122 |
Target: 5'- gCgCGCgGCCGUCUCCCaGGccaccAGAUGGCg -3' miRNA: 3'- -GgGUGgUGGUAGGGGGcUC-----UCUACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 146857 | 0.66 | 0.871122 |
Target: 5'- gCCCGCCGCCGa---UCGAGAGG-GACu -3' miRNA: 3'- -GGGUGGUGGUagggGGCUCUCUaCUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 68236 | 0.66 | 0.871122 |
Target: 5'- cCCCGCCgcgcgccacACCAcgCCCUCcAG-GAUGACa -3' miRNA: 3'- -GGGUGG---------UGGUa-GGGGGcUCuCUACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 28969 | 0.66 | 0.871122 |
Target: 5'- cCCCGCCgcuccGCCcgCCCCa-GGGGgcGGCg -3' miRNA: 3'- -GGGUGG-----UGGuaGGGGgcUCUCuaCUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 21934 | 0.66 | 0.871122 |
Target: 5'- aCCCugCGgcCCcgCCCCCuuugggcgGAGcgcgGGAUGACg -3' miRNA: 3'- -GGGugGU--GGuaGGGGG--------CUC----UCUACUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 146622 | 0.66 | 0.871122 |
Target: 5'- uCCCGCCGCauuaggCCCCCGcGGGcAUccGGCg -3' miRNA: 3'- -GGGUGGUGgua---GGGGGCuCUC-UA--CUG- -5' |
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5128 | 5' | -57.2 | NC_001798.1 | + | 59633 | 0.66 | 0.871122 |
Target: 5'- cUCCGCCGCCucggguccguAUCUCgCgGAGAGGgggGGCg -3' miRNA: 3'- -GGGUGGUGG----------UAGGG-GgCUCUCUa--CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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