miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 111992 0.69 0.418549
Target:  5'- aGCUcgauGaCCCUGUCuCGCGCGCGcacgCGCa -3'
miRNA:   3'- gCGAc---C-GGGACAG-GCGCGCGCa---GCGg -5'
5131 5' -63.5 NC_001798.1 + 111213 0.68 0.452427
Target:  5'- uGCUcGGCCacgGUcccggCCGCcaGCGCGUCGCg -3'
miRNA:   3'- gCGA-CCGGga-CA-----GGCG--CGCGCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 111140 0.74 0.223736
Target:  5'- gGC-GGCgCUGUCgGCccGCGCGUCGCUc -3'
miRNA:   3'- gCGaCCGgGACAGgCG--CGCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 110843 0.66 0.580939
Target:  5'- aGaCUGGCCgUG-CUGgGCGCGa-GCCa -3'
miRNA:   3'- gC-GACCGGgACaGGCgCGCGCagCGG- -5'
5131 5' -63.5 NC_001798.1 + 110677 0.67 0.561877
Target:  5'- cCGC-GGUCUguuuguuauugUGUCCGcCGUGCGUcCGCUa -3'
miRNA:   3'- -GCGaCCGGG-----------ACAGGC-GCGCGCA-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 110000 0.69 0.426037
Target:  5'- gCGCUGggcgcacuacaacGCCCUGaUCCGCGCcuuCGUC-CCg -3'
miRNA:   3'- -GCGAC-------------CGGGAC-AGGCGCGc--GCAGcGG- -5'
5131 5' -63.5 NC_001798.1 + 108863 0.66 0.580939
Target:  5'- gGCUGGC---GUUCGgGUGCGaCGCCg -3'
miRNA:   3'- gCGACCGggaCAGGCgCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 106848 0.72 0.293221
Target:  5'- uGgaGGCCCUGgggCCGCGCGacaauaUCGUCu -3'
miRNA:   3'- gCgaCCGGGACa--GGCGCGCgc----AGCGG- -5'
5131 5' -63.5 NC_001798.1 + 106698 0.66 0.600132
Target:  5'- aGCgGGCCUaccgacggCCGCGCGgCGUC-CCg -3'
miRNA:   3'- gCGaCCGGGaca-----GGCGCGC-GCAGcGG- -5'
5131 5' -63.5 NC_001798.1 + 106482 0.67 0.560928
Target:  5'- gCGC-GGCCCgagGUCCacuucGCauauuaaggugacGCGCGUgGCCu -3'
miRNA:   3'- -GCGaCCGGGa--CAGG-----CG-------------CGCGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 106333 0.66 0.609763
Target:  5'- aGCUGcuucauGCCCgugGUCCGCuguuCGCGUUugcugGCCg -3'
miRNA:   3'- gCGAC------CGGGa--CAGGCGc---GCGCAG-----CGG- -5'
5131 5' -63.5 NC_001798.1 + 105429 0.67 0.561877
Target:  5'- gCGCUGGgCCUGcagcacugCCGCcCGCucCGCCg -3'
miRNA:   3'- -GCGACCgGGACa-------GGCGcGCGcaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 105218 0.7 0.378446
Target:  5'- gCGCU-GCCCcGUCCGCaGCGCccuccccccUCGCCu -3'
miRNA:   3'- -GCGAcCGGGaCAGGCG-CGCGc--------AGCGG- -5'
5131 5' -63.5 NC_001798.1 + 103043 0.67 0.533622
Target:  5'- gGC-GGCCUcGcgUCGCacccccucGCGCGUCGCCg -3'
miRNA:   3'- gCGaCCGGGaCa-GGCG--------CGCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 102184 0.7 0.355655
Target:  5'- uCGUggGGCCCggaagCCugGCGCGCGgcgCGCCg -3'
miRNA:   3'- -GCGa-CCGGGaca--GG--CGCGCGCa--GCGG- -5'
5131 5' -63.5 NC_001798.1 + 101774 0.67 0.52803
Target:  5'- gCGCUgcuggcguuaacuaaGGCCCggccUCCGCGC-CGggCGCCu -3'
miRNA:   3'- -GCGA---------------CCGGGac--AGGCGCGcGCa-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 100864 0.66 0.590522
Target:  5'- uGCUGGUCCUGgCCG-GCcugGUCGCg -3'
miRNA:   3'- gCGACCGGGACaGGCgCGcg-CAGCGg -5'
5131 5' -63.5 NC_001798.1 + 98612 0.66 0.590522
Target:  5'- gGC-GGCCCc--CCGCGCcucgggcgGCGUgGCCg -3'
miRNA:   3'- gCGaCCGGGacaGGCGCG--------CGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 98556 0.66 0.586685
Target:  5'- gCGCUGGUCgUGggggcgcugguggCCGCGgugGCGUCGgCg -3'
miRNA:   3'- -GCGACCGGgACa------------GGCGCg--CGCAGCgG- -5'
5131 5' -63.5 NC_001798.1 + 97237 0.68 0.464634
Target:  5'- aGCUGGCgCUGUUCGgGCgGCGggcggagcacuucgaUCGCg -3'
miRNA:   3'- gCGACCGgGACAGGCgCG-CGC---------------AGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.