Results 1 - 20 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5137 | 5' | -61.8 | NC_001798.1 | + | 91301 | 0.66 | 0.703943 |
Target: 5'- cCCGGGGGuuGUgggGGgcaaaaaacccagaCGCCGCccGAGCCg -3' miRNA: 3'- aGGCCCCU--CGa--CCaa------------GCGGCG--CUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 177 | 0.66 | 0.702985 |
Target: 5'- gCCGcGGGGCUGccUUC-CCGCGGGCg -3' miRNA: 3'- aGGCcCCUCGACc-AAGcGGCGCUCGg -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 3850 | 0.66 | 0.702985 |
Target: 5'- gCCGGGGcGGCUG--UCGCCcaGCccGCCg -3' miRNA: 3'- aGGCCCC-UCGACcaAGCGG--CGcuCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 35436 | 0.66 | 0.702985 |
Target: 5'- -gCGGGaGGCgUGGgccgcuggCGCCGCG-GCCc -3' miRNA: 3'- agGCCCcUCG-ACCaa------GCGGCGCuCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 74410 | 0.66 | 0.702985 |
Target: 5'- gCCGGcGGAcCUGac-CGCCGCG-GCCc -3' miRNA: 3'- aGGCC-CCUcGACcaaGCGGCGCuCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 76928 | 0.66 | 0.702985 |
Target: 5'- gUCCGGGGcccccccccggaAGUcacGGcggCGCUGCGGGCg -3' miRNA: 3'- -AGGCCCC------------UCGa--CCaa-GCGGCGCUCGg -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 78337 | 0.66 | 0.702985 |
Target: 5'- aCCGcGGAGCUGGUcCGgaCCG-GGGUCa -3' miRNA: 3'- aGGCcCCUCGACCAaGC--GGCgCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 154515 | 0.66 | 0.702985 |
Target: 5'- gCCGcGGGGCUGccUUC-CCGCGGGCg -3' miRNA: 3'- aGGCcCCUCGACc-AAGcGGCGCUCGg -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 104567 | 0.66 | 0.702027 |
Target: 5'- uUCaCGcGGGuGCUGGUgucucggggaacgUCGCC-CgGGGCCg -3' miRNA: 3'- -AG-GC-CCCuCGACCA-------------AGCGGcG-CUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 135313 | 0.66 | 0.697228 |
Target: 5'- cCCGGGccguGCUGGagCGCCuggugccggacgcguGCGAcGCCu -3' miRNA: 3'- aGGCCCcu--CGACCaaGCGG---------------CGCU-CGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 29894 | 0.66 | 0.693379 |
Target: 5'- cCCGGcugcGGGUUGGgggUgGUCGCGGGCg -3' miRNA: 3'- aGGCCc---CUCGACCa--AgCGGCGCUCGg -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 43022 | 0.66 | 0.693379 |
Target: 5'- cCCGGGGggAGCgcgGGgccccgggCGCaaaugcggcgCGUGAGCCg -3' miRNA: 3'- aGGCCCC--UCGa--CCaa------GCG----------GCGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 43722 | 0.66 | 0.693379 |
Target: 5'- -gCGGGGGGCUGaa--GCacucaaaGUGGGCCa -3' miRNA: 3'- agGCCCCUCGACcaagCGg------CGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 59800 | 0.66 | 0.693379 |
Target: 5'- cCCGGGccuggcccucGAGgccuucuucuuCUGGggCGCCGCGGucGCCc -3' miRNA: 3'- aGGCCC----------CUC-----------GACCaaGCGGCGCU--CGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 69297 | 0.66 | 0.693379 |
Target: 5'- -gCGGGGGGCgccgGGgaCGgucagcccucCCGCGcGCCg -3' miRNA: 3'- agGCCCCUCGa---CCaaGC----------GGCGCuCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 73950 | 0.66 | 0.693379 |
Target: 5'- --aGGGGGGCgagUGGacgcgcgCgGCCGCGGGCUc -3' miRNA: 3'- aggCCCCUCG---ACCaa-----G-CGGCGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 1289 | 0.66 | 0.693379 |
Target: 5'- -gCGGGGGcGCg---UCGCCGuCGGGCUc -3' miRNA: 3'- agGCCCCU-CGaccaAGCGGC-GCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 16229 | 0.66 | 0.683726 |
Target: 5'- gUgGGGGGGC-GGUgggGCCG-GGGCCc -3' miRNA: 3'- aGgCCCCUCGaCCAag-CGGCgCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 91356 | 0.66 | 0.683726 |
Target: 5'- cCCGGGGgaAGCcGGgcCGcCCGCGGcacaaaacaucGCCg -3' miRNA: 3'- aGGCCCC--UCGaCCaaGC-GGCGCU-----------CGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 71114 | 0.66 | 0.683726 |
Target: 5'- cCCGGGGAcGCUGauggCGCgCGUGcggacggacgcGGCCg -3' miRNA: 3'- aGGCCCCU-CGACcaa-GCG-GCGC-----------UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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