miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5138 3' -59.2 NC_001798.1 + 102384 0.69 0.618697
Target:  5'- ---cGCCUGgcGGUcgGCGGCGAUgGCCc -3'
miRNA:   3'- cuccUGGACuaCCG--CGCCGCUAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 102187 0.69 0.618697
Target:  5'- uGGGGCCcgGAagccUGGCGCG-CGGcgCGCCg -3'
miRNA:   3'- cUCCUGGa-CU----ACCGCGCcGCUa-GCGG- -5'
5138 3' -59.2 NC_001798.1 + 100746 0.74 0.34776
Target:  5'- gGGGGACUUGG-GGCGCG-CGGUCGgCa -3'
miRNA:   3'- -CUCCUGGACUaCCGCGCcGCUAGCgG- -5'
5138 3' -59.2 NC_001798.1 + 98566 0.78 0.214769
Target:  5'- uGGGGGCgCUGGUGGcCGCGGUGG-CGUCg -3'
miRNA:   3'- -CUCCUG-GACUACC-GCGCCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 97536 0.7 0.530145
Target:  5'- gGGGGGCg-GAggcgUGGCGCGGgGA-CGCCc -3'
miRNA:   3'- -CUCCUGgaCU----ACCGCGCCgCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 97445 0.67 0.755728
Target:  5'- gGAGGcgcugcgccGCgUGcUGGCGCGGCuGGggGCCg -3'
miRNA:   3'- -CUCC---------UGgACuACCGCGCCG-CUagCGG- -5'
5138 3' -59.2 NC_001798.1 + 97284 0.67 0.726323
Target:  5'- gGGGGccACCUGgcGGCGCuggacauGGUGGaCGCCc -3'
miRNA:   3'- -CUCC--UGGACuaCCGCG-------CCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 97112 0.66 0.809587
Target:  5'- cGAGcugcgcuUCUGGcUGGCGUccGGCGAUCGCg -3'
miRNA:   3'- -CUCcu-----GGACU-ACCGCG--CCGCUAGCGg -5'
5138 3' -59.2 NC_001798.1 + 95378 0.74 0.340259
Target:  5'- gGAGGGC-----GGgGCGGCGGUCGCCa -3'
miRNA:   3'- -CUCCUGgacuaCCgCGCCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 94566 0.66 0.783237
Target:  5'- cGAGG-CCgccaaGGCGCGG--GUCGCCa -3'
miRNA:   3'- -CUCCuGGacua-CCGCGCCgcUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 93147 0.7 0.578962
Target:  5'- --uGGCCucggUGAUGGCG-GGCGA-CGCCg -3'
miRNA:   3'- cucCUGG----ACUACCGCgCCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 93067 0.66 0.774185
Target:  5'- cGAGGccaGCCagGGUaagccccagcggGGCGCGcGCGA-CGCCg -3'
miRNA:   3'- -CUCC---UGGa-CUA------------CCGCGC-CGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 91814 0.69 0.608731
Target:  5'- uGGGGACCgug-GGCGgGGCccGA-CGCCg -3'
miRNA:   3'- -CUCCUGGacuaCCGCgCCG--CUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 88182 0.73 0.403509
Target:  5'- cGGGACCUGc--GCGCGGCGG--GCCa -3'
miRNA:   3'- cUCCUGGACuacCGCGCCGCUagCGG- -5'
5138 3' -59.2 NC_001798.1 + 87756 0.66 0.79216
Target:  5'- -cGGcCCUGAgccGCGCGGCcacGUCGUCc -3'
miRNA:   3'- cuCCuGGACUac-CGCGCCGc--UAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 85669 0.66 0.783237
Target:  5'- -cGGACC-GAcGGCGgGGUGcccgggCGCCa -3'
miRNA:   3'- cuCCUGGaCUaCCGCgCCGCua----GCGG- -5'
5138 3' -59.2 NC_001798.1 + 84729 0.66 0.774185
Target:  5'- -cGGuguCCUGcguauGUGGgGCGGCGGg-GCCg -3'
miRNA:   3'- cuCCu--GGAC-----UACCgCGCCGCUagCGG- -5'
5138 3' -59.2 NC_001798.1 + 83977 0.68 0.688309
Target:  5'- cGAGGGCCUGcucggcGGCGCGacacagGAUcCGCCg -3'
miRNA:   3'- -CUCCUGGACua----CCGCGCcg----CUA-GCGG- -5'
5138 3' -59.2 NC_001798.1 + 83331 0.72 0.460966
Target:  5'- cGAGGGCCgcagccauucGGcCGCGGCG-UCGCCc -3'
miRNA:   3'- -CUCCUGGacua------CC-GCGCCGCuAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 80673 0.69 0.608731
Target:  5'- -uGGACCUGGuucUGGcCGCGGUGcuccucggcgCGCCc -3'
miRNA:   3'- cuCCUGGACU---ACC-GCGCCGCua--------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.