miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 3' -45.5 NC_001798.1 + 136592 0.66 0.99999
Target:  5'- aCAcAGUCCGugcGGGGGACGgGCc- -3'
miRNA:   3'- cGUuUUAGGUuuuUUCCCUGCgCGuc -5'
5145 3' -45.5 NC_001798.1 + 135235 0.7 0.997801
Target:  5'- gGCug---CCGGAAGcccGGGGGCGgGCGGg -3'
miRNA:   3'- -CGuuuuaGGUUUUU---UCCCUGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 133586 0.68 0.999882
Target:  5'- cGCAGAcguuUCCcGGGgcGGGGCGCGUu- -3'
miRNA:   3'- -CGUUUu---AGGuUUUuuCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 131133 0.69 0.999343
Target:  5'- aGCAGGcucugcguGUCCAAccgGAGGGGGAcggcuacaccccCGCGCAc -3'
miRNA:   3'- -CGUUU--------UAGGUU---UUUUCCCU------------GCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 128414 0.71 0.996577
Target:  5'- gGCGGGGccugacgaccgccUCCAcgcugcgguGGGGCGCGCAGg -3'
miRNA:   3'- -CGUUUU-------------AGGUuuuuu----CCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 125693 0.77 0.916734
Target:  5'- gGCGAAggaGUCCGAcGucGGGcGCGCGCGGg -3'
miRNA:   3'- -CGUUU---UAGGUUuUuuCCC-UGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 125507 1.12 0.02138
Target:  5'- gGCAAAAUCCAAAAAAGGGACGCGCAGc -3'
miRNA:   3'- -CGUUUUAGGUUUUUUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 122693 0.69 0.999343
Target:  5'- aGCGAGuggCUAGGGGAGGuGACGCgGCGc -3'
miRNA:   3'- -CGUUUua-GGUUUUUUCC-CUGCG-CGUc -5'
5145 3' -45.5 NC_001798.1 + 121927 0.67 0.999963
Target:  5'- cGCGcuGGUCCAGc---GGGcCGUGCAGg -3'
miRNA:   3'- -CGUu-UUAGGUUuuuuCCCuGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 120395 0.7 0.998765
Target:  5'- gGCGAuGUCCGc--GGGGGccgaucccgugaGCGCGCGGa -3'
miRNA:   3'- -CGUUuUAGGUuuuUUCCC------------UGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 119520 0.67 0.999963
Target:  5'- gGCAGGcgUguuGGGAAGGGACcCGCGGa -3'
miRNA:   3'- -CGUUUuaGgu-UUUUUCCCUGcGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 117664 0.72 0.994838
Target:  5'- uGCAAc--CCGc---GGGGACGCGCGGc -3'
miRNA:   3'- -CGUUuuaGGUuuuuUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 114559 0.7 0.998494
Target:  5'- cGCAAcGUCCAGGccguccuGGGGGCguuugaGCGCGGc -3'
miRNA:   3'- -CGUUuUAGGUUUuu-----UCCCUG------CGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 111884 0.66 0.999993
Target:  5'- aGCGAGcUCgGGAGccGGGGGAgGUGCGc -3'
miRNA:   3'- -CGUUUuAGgUUUU--UUCCCUgCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 110217 0.68 0.999882
Target:  5'- ------aCCugcGAAGGGcACGCGCGGg -3'
miRNA:   3'- cguuuuaGGuuuUUUCCC-UGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 106489 0.71 0.996858
Target:  5'- cCGAGGUCCAcuucgcauAuuAAGGuGACGCGCGu -3'
miRNA:   3'- cGUUUUAGGU--------UuuUUCC-CUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 105593 0.66 0.99998
Target:  5'- aGUAcGGGUCCAuguucGAGGGcGGCGgGCGGg -3'
miRNA:   3'- -CGU-UUUAGGUuu---UUUCC-CUGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 101827 0.66 0.999993
Target:  5'- gGUAAGcUCgCGGcgGGGGGAgGCGUGGg -3'
miRNA:   3'- -CGUUUuAG-GUUuuUUCCCUgCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 100969 0.66 0.999993
Target:  5'- uCAAGAcuUCCGAccccGGGGGCGUggGCGGg -3'
miRNA:   3'- cGUUUU--AGGUUuuu-UCCCUGCG--CGUC- -5'
5145 3' -45.5 NC_001798.1 + 100728 0.68 0.999742
Target:  5'- cGCGuucUUCGAGGGGaugggggacuuGGGGCGCGCGGu -3'
miRNA:   3'- -CGUuuuAGGUUUUUU-----------CCCUGCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.