Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5151 | 3' | -62.1 | NC_001798.1 | + | 29990 | 0.72 | 0.306417 |
Target: 5'- cCGUGGGCCgugcgccGCCCCCCGAcc--CUCu -3' miRNA: 3'- aGCGCCCGGa------CGGGGGGCUacuaGAG- -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 45520 | 0.72 | 0.299686 |
Target: 5'- uUCGCcccGGGCCcgUGCCCCCCGcgGAc--- -3' miRNA: 3'- -AGCG---CCCGG--ACGGGGGGCuaCUagag -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 25598 | 0.72 | 0.297026 |
Target: 5'- cCGCGGGCCgcgccgggggcggGCCCCCCccggaGUGGUC-Cg -3' miRNA: 3'- aGCGCCCGGa------------CGGGGGGc----UACUAGaG- -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 94191 | 0.76 | 0.188298 |
Target: 5'- cUGCGGGCCgUGCCCCCUGcUGcagCUCc -3' miRNA: 3'- aGCGCCCGG-ACGGGGGGCuACua-GAG- -5' |
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5151 | 3' | -62.1 | NC_001798.1 | + | 120650 | 1.08 | 0.000964 |
Target: 5'- cUCGCGGGCCUGCCCCCCGAUGAUCUCc -3' miRNA: 3'- -AGCGCCCGGACGGGGGGCUACUAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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