miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 3' -64.8 NC_001798.1 + 4362 0.7 0.355453
Target:  5'- -cCGGCGggGGGCGCgCCggCGGCGGu -3'
miRNA:   3'- gaGCCGCgaCCUGCG-GGagGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 65592 0.7 0.355453
Target:  5'- gUCGcaGCGCUGGGCcUCCUcgCCGGCGaGGa -3'
miRNA:   3'- gAGC--CGCGACCUGcGGGA--GGCCGC-CC- -5'
5169 3' -64.8 NC_001798.1 + 74365 0.69 0.362845
Target:  5'- --gGGCGCcaUGGuguuuuuugUGCCCUCCGGCccGGGg -3'
miRNA:   3'- gagCCGCG--ACCu--------GCGGGAGGCCG--CCC- -5'
5169 3' -64.8 NC_001798.1 + 129340 0.69 0.362845
Target:  5'- -aCGGcCGC-GGAgCGCCCgccgggcCUGGCGGGg -3'
miRNA:   3'- gaGCC-GCGaCCU-GCGGGa------GGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 104525 0.69 0.370342
Target:  5'- -gCGGCGCgguuGACGUCgUCgCGGUGGGc -3'
miRNA:   3'- gaGCCGCGac--CUGCGGgAG-GCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 39339 0.69 0.37337
Target:  5'- -cCGcGCGCUcGGAuauggaucgcagaacCGCCCgaaCGGCGGGg -3'
miRNA:   3'- gaGC-CGCGA-CCU---------------GCGGGag-GCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 125254 0.69 0.377944
Target:  5'- gUUGGgGCacGGCGUCCUCCGGCGc- -3'
miRNA:   3'- gAGCCgCGacCUGCGGGAGGCCGCcc -5'
5169 3' -64.8 NC_001798.1 + 2972 0.69 0.377944
Target:  5'- gUCGGCGUgcggcgGGGCGgCCggCCcGCGGGc -3'
miRNA:   3'- gAGCCGCGa-----CCUGCgGGa-GGcCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 96967 0.69 0.377944
Target:  5'- --aGGCGCUGG-CGCggaCCg-CGGCGGGc -3'
miRNA:   3'- gagCCGCGACCuGCG---GGagGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 12854 0.69 0.377944
Target:  5'- -gUGGCGUUGGugGUgucggacagCUCCGGCGGc -3'
miRNA:   3'- gaGCCGCGACCugCGg--------GAGGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 28856 0.69 0.38565
Target:  5'- -cCGGCGa-GGGCGgCCUcggCCGGCGGa -3'
miRNA:   3'- gaGCCGCgaCCUGCgGGA---GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 71420 0.69 0.38565
Target:  5'- ---cGCGC-GGACGCCCcCCGGCcacGGGc -3'
miRNA:   3'- gagcCGCGaCCUGCGGGaGGCCG---CCC- -5'
5169 3' -64.8 NC_001798.1 + 26328 0.69 0.39346
Target:  5'- -gUGGCGCUGGggcgcgACGCCgUgcgcggcggcCCGGCGGa -3'
miRNA:   3'- gaGCCGCGACC------UGCGGgA----------GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 97824 0.69 0.39346
Target:  5'- -gCGcGCGCUucuGCGCCCUgaCGGCGGGc -3'
miRNA:   3'- gaGC-CGCGAcc-UGCGGGAg-GCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 147177 0.69 0.401371
Target:  5'- -cCGGCGCcGGGCGgaaggcguccCCCgcCCGGCGGu -3'
miRNA:   3'- gaGCCGCGaCCUGC----------GGGa-GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 121376 0.69 0.401371
Target:  5'- uUCGGCGUUuGcCGCCUacgugCCGGCGGa -3'
miRNA:   3'- gAGCCGCGAcCuGCGGGa----GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 23534 0.68 0.407772
Target:  5'- cCUCGGCGC-GGACGacgaggaGGCGGGg -3'
miRNA:   3'- -GAGCCGCGaCCUGCgggagg-CCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 36495 0.68 0.409383
Target:  5'- -cCGGCGCgacgcGGGCGgCCg--GGCGGGg -3'
miRNA:   3'- gaGCCGCGa----CCUGCgGGaggCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 47672 0.68 0.417494
Target:  5'- -gCGGCGCUGGcccgaugcgcgcGCGCCCgaggGGCGaGGu -3'
miRNA:   3'- gaGCCGCGACC------------UGCGGGagg-CCGC-CC- -5'
5169 3' -64.8 NC_001798.1 + 123948 0.68 0.417494
Target:  5'- --gGGC-CUGGugGCaCCUccCCGGCGGc -3'
miRNA:   3'- gagCCGcGACCugCG-GGA--GGCCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.