miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 3' -64.8 NC_001798.1 + 102761 0.74 0.182756
Target:  5'- -gCGGCGCgGGaACGCUCg-CGGCGGGg -3'
miRNA:   3'- gaGCCGCGaCC-UGCGGGagGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 102657 0.66 0.55876
Target:  5'- --aGGgGCcgGGGCGCCCgaugCCGaaaCGGGg -3'
miRNA:   3'- gagCCgCGa-CCUGCGGGa---GGCc--GCCC- -5'
5169 3' -64.8 NC_001798.1 + 101801 0.73 0.216896
Target:  5'- cCUCcGCGCcGGGCGCCucggguugggguaagCUCgCGGCGGGg -3'
miRNA:   3'- -GAGcCGCGaCCUGCGG---------------GAG-GCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 98569 0.72 0.24077
Target:  5'- --gGGCGCUGGugGCCgCgguggcgUCGGCGGc -3'
miRNA:   3'- gagCCGCGACCugCGG-Ga------GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 97824 0.69 0.39346
Target:  5'- -gCGcGCGCUucuGCGCCCUgaCGGCGGGc -3'
miRNA:   3'- gaGC-CGCGAcc-UGCGGGAg-GCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 97549 0.71 0.300196
Target:  5'- -gUGGCGCggGGACGCCCgcgagCgaGGaCGGGg -3'
miRNA:   3'- gaGCCGCGa-CCUGCGGGa----Gg-CC-GCCC- -5'
5169 3' -64.8 NC_001798.1 + 97296 0.75 0.162459
Target:  5'- -gCGGCGCuggacauggUGGACGCCCUgaucaUCGGCGGc -3'
miRNA:   3'- gaGCCGCG---------ACCUGCGGGA-----GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 96967 0.69 0.377944
Target:  5'- --aGGCGCUGG-CGCggaCCg-CGGCGGGc -3'
miRNA:   3'- gagCCGCGACCuGCG---GGagGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 93503 0.66 0.568138
Target:  5'- --gGGCGCcccacGGCGCCCcucgUCGGCGGa -3'
miRNA:   3'- gagCCGCGac---CUGCGGGa---GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 87975 0.74 0.182756
Target:  5'- -gCGGgGCuUGGACGCgCCUCCcGGgGGGu -3'
miRNA:   3'- gaGCCgCG-ACCUGCG-GGAGG-CCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 86271 0.73 0.230131
Target:  5'- --gGGCGC-GGGCGCa--CCGGCGGGg -3'
miRNA:   3'- gagCCGCGaCCUGCGggaGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 83857 0.7 0.333221
Target:  5'- -gCGGCGCUGGcgggcccgaggcgGCGaCCC-CCGGCccGGGc -3'
miRNA:   3'- gaGCCGCGACC-------------UGC-GGGaGGCCG--CCC- -5'
5169 3' -64.8 NC_001798.1 + 81422 0.66 0.549425
Target:  5'- -aCGGCcuggaggaGCUGG-CGUCCgacgacgCCGGCGGc -3'
miRNA:   3'- gaGCCG--------CGACCuGCGGGa------GGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 80919 0.66 0.567199
Target:  5'- gUCGGCGCUcaucgccGaGCGCCCUcucgCCGaCGGGc -3'
miRNA:   3'- gAGCCGCGA-------CcUGCGGGA----GGCcGCCC- -5'
5169 3' -64.8 NC_001798.1 + 80402 0.66 0.55876
Target:  5'- -gCGGCGgUGaGCGUCCUCgGGCGc- -3'
miRNA:   3'- gaGCCGCgACcUGCGGGAGgCCGCcc -5'
5169 3' -64.8 NC_001798.1 + 79938 0.67 0.476872
Target:  5'- gCUgGGCccagcuggGCUGGGCGUCCggagCGGCGGc -3'
miRNA:   3'- -GAgCCG--------CGACCUGCGGGag--GCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 78885 0.7 0.313362
Target:  5'- aCUCGGCGCcgcgucGACGCCCUgCGGaGGu -3'
miRNA:   3'- -GAGCCGCGac----CUGCGGGAgGCCgCCc -5'
5169 3' -64.8 NC_001798.1 + 77430 0.68 0.434005
Target:  5'- --aGGCGCgccgGGccuGCGCCCagCCGGaGGGg -3'
miRNA:   3'- gagCCGCGa---CC---UGCGGGa-GGCCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 77207 0.66 0.530907
Target:  5'- -gCGGCGacggUGGACGCgg-CCGuGCGGGc -3'
miRNA:   3'- gaGCCGCg---ACCUGCGggaGGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 74365 0.69 0.362845
Target:  5'- --gGGCGCcaUGGuguuuuuugUGCCCUCCGGCccGGGg -3'
miRNA:   3'- gagCCGCG--ACCu--------GCGGGAGGCCG--CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.