Results 41 - 60 of 343 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5193 | 5' | -66.4 | NC_001798.1 | + | 9654 | 0.75 | 0.141269 |
Target: 5'- gCgCAGCGGGcCGCGCGCGGaggGCgCGGGa -3' miRNA: 3'- -GgGUCGCCCcGCGCGCGCUg--CG-GCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 39627 | 0.75 | 0.147732 |
Target: 5'- gCCGGCGGGGUuuugGUGUggagucgGCGcCGCCGGGg -3' miRNA: 3'- gGGUCGCCCCG----CGCG-------CGCuGCGGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 3005 | 0.75 | 0.137972 |
Target: 5'- cCCgGGCGcGGGgGCGCgGCGG-GCCGGGc -3' miRNA: 3'- -GGgUCGC-CCCgCGCG-CGCUgCGGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 31143 | 0.75 | 0.141269 |
Target: 5'- cCCCGGCGcGGGgGCG-GCGGUGCgGGGg -3' miRNA: 3'- -GGGUCGC-CCCgCGCgCGCUGCGgCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 40154 | 0.75 | 0.134746 |
Target: 5'- uCCgAG-GGGGCGCGUGUcggaagagaGugGCCGGGu -3' miRNA: 3'- -GGgUCgCCCCGCGCGCG---------CugCGGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 3763 | 0.75 | 0.141269 |
Target: 5'- gCCCAGCucGGGCGCccacaCG-GGCGCCGGGg -3' miRNA: 3'- -GGGUCGc-CCCGCGc----GCgCUGCGGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 36481 | 0.75 | 0.144638 |
Target: 5'- gCCGGgagGGGGCGCcgGCGCGACGCgGGc -3' miRNA: 3'- gGGUCg--CCCCGCG--CGCGCUGCGgCCc -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 22144 | 0.74 | 0.166431 |
Target: 5'- gCCGGCGGGG-GCcaacgggaGCGCGGgGCCGGc -3' miRNA: 3'- gGGUCGCCCCgCG--------CGCGCUgCGGCCc -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 106085 | 0.74 | 0.170339 |
Target: 5'- gUCUGGCGGucgcggcgacccGGCGC-CGCGAcCGCCGGGu -3' miRNA: 3'- -GGGUCGCC------------CCGCGcGCGCU-GCGGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 2292 | 0.74 | 0.158857 |
Target: 5'- gCCAGCGaGGccaGCGCGCGCGggucgaacaugaGgGCCGGGc -3' miRNA: 3'- gGGUCGC-CC---CGCGCGCGC------------UgCGGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 3268 | 0.74 | 0.151596 |
Target: 5'- gCCGGCGGGcaccGCGCGCucgucggccgGCGACGCCGc- -3' miRNA: 3'- gGGUCGCCC----CGCGCG----------CGCUGCGGCcc -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 102496 | 0.74 | 0.155188 |
Target: 5'- ---uGCGGGGaCGgGC-CGGCGCCGGGg -3' miRNA: 3'- ggguCGCCCC-GCgCGcGCUGCGGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 147224 | 0.74 | 0.162605 |
Target: 5'- cCCCGGCGGaGCGCGgG-GGCcCCGGGg -3' miRNA: 3'- -GGGUCGCCcCGCGCgCgCUGcGGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 71092 | 0.74 | 0.162605 |
Target: 5'- gCCC-GCGGucGGCGUGCGCGcCcCCGGGg -3' miRNA: 3'- -GGGuCGCC--CCGCGCGCGCuGcGGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 117668 | 0.74 | 0.158857 |
Target: 5'- aCCC-GCGGGGaCGCGCggccgGCGGCGUguacgCGGGg -3' miRNA: 3'- -GGGuCGCCCC-GCGCG-----CGCUGCG-----GCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 26359 | 0.74 | 0.166431 |
Target: 5'- gCCCGGCGGagcuGCGCGgGCcGCGgCGGGa -3' miRNA: 3'- -GGGUCGCCc---CGCGCgCGcUGCgGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 69277 | 0.74 | 0.162605 |
Target: 5'- aCCUGGCGGGucaggugauaGCGgGgGGCGCCGGGg -3' miRNA: 3'- -GGGUCGCCCcg--------CGCgCgCUGCGGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 43021 | 0.74 | 0.170339 |
Target: 5'- gCCCGG-GGGGaGCGCGgGGCcCCGGGc -3' miRNA: 3'- -GGGUCgCCCCgCGCGCgCUGcGGCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 153805 | 0.74 | 0.158857 |
Target: 5'- -gCGGCGGGGgGCaggcggcggcagGCGCGGCGUgCGGGg -3' miRNA: 3'- ggGUCGCCCCgCG------------CGCGCUGCG-GCCC- -5' |
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5193 | 5' | -66.4 | NC_001798.1 | + | 148409 | 0.74 | 0.158857 |
Target: 5'- gCgGGCGGGGUGgGCGcCGGgGCgGGGg -3' miRNA: 3'- gGgUCGCCCCGCgCGC-GCUgCGgCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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