miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5250 5' -51.5 NC_001798.1 + 126621 0.66 0.992232
Target:  5'- cGGGGgGGUAcGGCGAGGUgCAguugauUCGCGa -3'
miRNA:   3'- -CCUCgCCAUcCCGCUUUA-GU------AGUGUg -5'
5250 5' -51.5 NC_001798.1 + 105007 0.66 0.992232
Target:  5'- cGGGUGGUcAGGGgGAAGUCcgCGa-- -3'
miRNA:   3'- cCUCGCCA-UCCCgCUUUAGuaGUgug -5'
5250 5' -51.5 NC_001798.1 + 4224 0.66 0.992232
Target:  5'- gGGGGCGc--GGGCGgcGUCGUCGuCGu -3'
miRNA:   3'- -CCUCGCcauCCCGCuuUAGUAGU-GUg -5'
5250 5' -51.5 NC_001798.1 + 5912 0.66 0.99109
Target:  5'- -aGGCGGgcccggacggGGGGCGGGccguUCcUCGCGCa -3'
miRNA:   3'- ccUCGCCa---------UCCCGCUUu---AGuAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 22492 0.66 0.99109
Target:  5'- -aGGCGacGGGGCGA--UCGUcCACACg -3'
miRNA:   3'- ccUCGCcaUCCCGCUuuAGUA-GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 56185 0.66 0.99109
Target:  5'- cGGGGgGGUGGGGUGggGUguggugggUACGg -3'
miRNA:   3'- -CCUCgCCAUCCCGCuuUAgua-----GUGUg -5'
5250 5' -51.5 NC_001798.1 + 151173 0.66 0.99109
Target:  5'- cGGGGgGGU-GGGCGA---CAggGCGCg -3'
miRNA:   3'- -CCUCgCCAuCCCGCUuuaGUagUGUG- -5'
5250 5' -51.5 NC_001798.1 + 15269 0.66 0.99109
Target:  5'- cGGGCGGUGccccggguuccGGGCGuggcGGUgGUCGCGg -3'
miRNA:   3'- cCUCGCCAU-----------CCCGCu---UUAgUAGUGUg -5'
5250 5' -51.5 NC_001798.1 + 15908 0.66 0.989819
Target:  5'- cGGGGUGGgaagGGGGCGuacgGAcCGUCAUc- -3'
miRNA:   3'- -CCUCGCCa---UCCCGCu---UUaGUAGUGug -5'
5250 5' -51.5 NC_001798.1 + 14365 0.66 0.989819
Target:  5'- cGGGGcCGGUGGGuGCGGccccaacagCAgCACACc -3'
miRNA:   3'- -CCUC-GCCAUCC-CGCUuua------GUaGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 48750 0.66 0.989819
Target:  5'- cGGGGUGGUGGacGCGAGAugucaguccUCGgggaCGCACg -3'
miRNA:   3'- -CCUCGCCAUCc-CGCUUU---------AGUa---GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 60000 0.66 0.989819
Target:  5'- uGGGGcCGGUGGcGGUGA---CA-CACACg -3'
miRNA:   3'- -CCUC-GCCAUC-CCGCUuuaGUaGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 10314 0.66 0.988991
Target:  5'- gGGGGgGGUuggGGGGgGAAcgcugaccggcgugcGUuCGUCACGCc -3'
miRNA:   3'- -CCUCgCCA---UCCCgCUU---------------UA-GUAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 30992 0.66 0.98841
Target:  5'- cGGGCGGgggucGGGCGggG--GUCGgGCg -3'
miRNA:   3'- cCUCGCCau---CCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 9326 0.66 0.98841
Target:  5'- uGAGCGGgc-GGCGAGAU--UUACGCc -3'
miRNA:   3'- cCUCGCCaucCCGCUUUAguAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 91128 0.66 0.988112
Target:  5'- gGGGGCGuccucGUccagcgaacgcGGGGCGAuaaaucgaaauUCGUCGCACu -3'
miRNA:   3'- -CCUCGC-----CA-----------UCCCGCUuu---------AGUAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 36101 0.66 0.986856
Target:  5'- cGGGUGGUGGGGgGggGcccggcugCGUCuCGCc -3'
miRNA:   3'- cCUCGCCAUCCCgCuuUa-------GUAGuGUG- -5'
5250 5' -51.5 NC_001798.1 + 36612 0.66 0.986856
Target:  5'- -cGGCGGccGGGCGggGg---CGCGCg -3'
miRNA:   3'- ccUCGCCauCCCGCuuUaguaGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 36591 0.66 0.986856
Target:  5'- -cGGCGGccGGGCGggGg---CGCGCg -3'
miRNA:   3'- ccUCGCCauCCCGCuuUaguaGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 36570 0.66 0.986856
Target:  5'- -cGGCGGccGGGCGggGg---CGCGCg -3'
miRNA:   3'- ccUCGCCauCCCGCuuUaguaGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.