miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5319 3' -63.3 NC_001798.1 + 90384 0.66 0.588988
Target:  5'- cGAACgCCGucggGGGGCGcGGUugGGCCGGc -3'
miRNA:   3'- -UUUGgGGCcaa-CCCCGC-CCG--UCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 100979 0.66 0.588988
Target:  5'- cGACCCCGGggGcguGGGCGGGgAGg--- -3'
miRNA:   3'- uUUGGGGCCaaC---CCCGCCCgUCggcu -5'
5319 3' -63.3 NC_001798.1 + 25595 0.66 0.588988
Target:  5'- uGGCCgCGGgccgcgccgGGGGCGGGCcccccCCGGa -3'
miRNA:   3'- uUUGGgGCCaa-------CCCCGCCCGuc---GGCU- -5'
5319 3' -63.3 NC_001798.1 + 17974 0.66 0.579234
Target:  5'- cGGACgUCGGggGGGGCuGcGCGGCCc- -3'
miRNA:   3'- -UUUGgGGCCaaCCCCGcC-CGUCGGcu -5'
5319 3' -63.3 NC_001798.1 + 114496 0.66 0.569515
Target:  5'- gAGGCCCUGGacGGGaCGGGCAuuaGCCu- -3'
miRNA:   3'- -UUUGGGGCCaaCCCcGCCCGU---CGGcu -5'
5319 3' -63.3 NC_001798.1 + 135999 0.66 0.569515
Target:  5'- --gUCCCG---GGGGCGGGgAGUCGGu -3'
miRNA:   3'- uuuGGGGCcaaCCCCGCCCgUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 146083 0.66 0.569515
Target:  5'- gGggUCCgGGgcGaGGCGGGCGGgCGAa -3'
miRNA:   3'- -UuuGGGgCCaaCcCCGCCCGUCgGCU- -5'
5319 3' -63.3 NC_001798.1 + 2528 0.66 0.569515
Target:  5'- cGGCgUCGGc-GGGGCGGGgGGCgCGGc -3'
miRNA:   3'- uUUGgGGCCaaCCCCGCCCgUCG-GCU- -5'
5319 3' -63.3 NC_001798.1 + 86431 0.66 0.569515
Target:  5'- cGGACCCCGaGgcgcagcccGGGGaCGGG-GGCCGGu -3'
miRNA:   3'- -UUUGGGGC-Caa-------CCCC-GCCCgUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 27270 0.66 0.569515
Target:  5'- cAGCCCCGuggcgcgcGggGGGGagGGGCuGCCGc -3'
miRNA:   3'- uUUGGGGC--------CaaCCCCg-CCCGuCGGCu -5'
5319 3' -63.3 NC_001798.1 + 150081 0.66 0.568545
Target:  5'- --cCCCUGGggggcgaGGGGCgagcgcgGGGCGGCgGAg -3'
miRNA:   3'- uuuGGGGCCaa-----CCCCG-------CCCGUCGgCU- -5'
5319 3' -63.3 NC_001798.1 + 79043 0.66 0.559836
Target:  5'- -cACCaacaCGGUgucgGGGcuGCGGGCccAGCCGGc -3'
miRNA:   3'- uuUGGg---GCCAa---CCC--CGCCCG--UCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 4356 0.66 0.550204
Target:  5'- cGAGCgCCGGcggGGGGCGcgccGGCGGCgGu -3'
miRNA:   3'- -UUUGgGGCCaa-CCCCGC----CCGUCGgCu -5'
5319 3' -63.3 NC_001798.1 + 67172 0.66 0.547324
Target:  5'- uGGCCCCauggaaaggggggaGGagGGGGCGGGgggaCAGCCu- -3'
miRNA:   3'- uUUGGGG--------------CCaaCCCCGCCC----GUCGGcu -5'
5319 3' -63.3 NC_001798.1 + 33376 0.66 0.540623
Target:  5'- cAGACCCUGGggGuGGUGGGCAGgaGu -3'
miRNA:   3'- -UUUGGGGCCaaCcCCGCCCGUCggCu -5'
5319 3' -63.3 NC_001798.1 + 36799 0.66 0.540623
Target:  5'- gGGACCUCGGUUGGGcgacgucuGCGGucuaGUGGUCGGc -3'
miRNA:   3'- -UUUGGGGCCAACCC--------CGCC----CGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 150564 0.66 0.540623
Target:  5'- cGGCCCgGGgcccgcGGGGCGGcGCGGagaCGGc -3'
miRNA:   3'- uUUGGGgCCaa----CCCCGCC-CGUCg--GCU- -5'
5319 3' -63.3 NC_001798.1 + 67926 0.66 0.531099
Target:  5'- --uCCCCGGcacacaGGGGUGGGguGCg-- -3'
miRNA:   3'- uuuGGGGCCaa----CCCCGCCCguCGgcu -5'
5319 3' -63.3 NC_001798.1 + 146281 0.66 0.53015
Target:  5'- cAGCCggagaggCCGaGcgGGGaGUGGGCGGCCGGg -3'
miRNA:   3'- uUUGG-------GGC-CaaCCC-CGCCCGUCGGCU- -5'
5319 3' -63.3 NC_001798.1 + 149179 0.66 0.53015
Target:  5'- ---gUCCGGUggGGGGCGGcuuccuucgggcaGCaAGCCGAg -3'
miRNA:   3'- uuugGGGCCAa-CCCCGCC-------------CG-UCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.