Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5415 | 5' | -60.5 | NC_001798.1 | + | 34127 | 0.66 | 0.735171 |
Target: 5'- -gGGCCC-GACCCGCGccugcccccccGGGaacgacgacggggggGGGGGAa -3' miRNA: 3'- caCCGGGuCUGGGCGC-----------UCCa--------------UCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 69163 | 0.66 | 0.734219 |
Target: 5'- -cGGCCgGGcggaGCCCgaugGCGggccAGGUGGGGGAg -3' miRNA: 3'- caCCGGgUC----UGGG----CGC----UCCAUCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 15324 | 0.66 | 0.734219 |
Target: 5'- -cGGCCgaGGGCCCcgGCGcGGUAGcGGGGg -3' miRNA: 3'- caCCGGg-UCUGGG--CGCuCCAUC-UCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 58983 | 0.66 | 0.734219 |
Target: 5'- -cGGCggCCGGGCgaaCGCGGGGggggcgcGGAGGAa -3' miRNA: 3'- caCCG--GGUCUGg--GCGCUCCa------UCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 111906 | 0.66 | 0.724653 |
Target: 5'- gGUGcGCCUGGGCCaggGCGAauacGUAGGGGGa -3' miRNA: 3'- -CAC-CGGGUCUGGg--CGCUc---CAUCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 15058 | 0.66 | 0.724653 |
Target: 5'- -gGGCCCGGGgCgCGCGGGG-GGuGGu -3' miRNA: 3'- caCCGGGUCUgG-GCGCUCCaUCuCCu -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 122095 | 0.66 | 0.724653 |
Target: 5'- -gGGCCUGGAgCCGCccGGcGGGGGGc -3' miRNA: 3'- caCCGGGUCUgGGCGcuCCaUCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 147026 | 0.66 | 0.724653 |
Target: 5'- -gGGCCgGGGCuuggCCGcCGAGGUgcgccccggccGGAGGGg -3' miRNA: 3'- caCCGGgUCUG----GGC-GCUCCA-----------UCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 35404 | 0.66 | 0.720805 |
Target: 5'- -cGGCCgcCGGauGCCCGCGGGGgccuaaugcggcgGGAGGc -3' miRNA: 3'- caCCGG--GUC--UGGGCGCUCCa------------UCUCCu -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 122679 | 0.66 | 0.715012 |
Target: 5'- uUGGCCCccACCagaGCGAguGGcUAGGGGAg -3' miRNA: 3'- cACCGGGucUGGg--CGCU--CC-AUCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 150520 | 0.66 | 0.705303 |
Target: 5'- -gGGCCCgAGgacACCUGUgcgGAGGaGGAGGAg -3' miRNA: 3'- caCCGGG-UC---UGGGCG---CUCCaUCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 75855 | 0.66 | 0.705303 |
Target: 5'- cUGGCCCAGuuuGCCCGgGgcgaagagaugcGGGUcGAGGc -3' miRNA: 3'- cACCGGGUC---UGGGCgC------------UCCAuCUCCu -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 2356 | 0.66 | 0.694557 |
Target: 5'- gGUGGUCCGugagcucggccacGGCCCGCGGGGcgcAGuAGGc -3' miRNA: 3'- -CACCGGGU-------------CUGGGCGCUCCa--UC-UCCu -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 34742 | 0.66 | 0.68572 |
Target: 5'- -gGGCCCGGgagcggggcgGCCCGgGAGGgAGAaGAa -3' miRNA: 3'- caCCGGGUC----------UGGGCgCUCCaUCUcCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 69527 | 0.66 | 0.68572 |
Target: 5'- cGUGGCCCGcGAgCUCGCGcgggcuGGUGGuGGu -3' miRNA: 3'- -CACCGGGU-CU-GGGCGCu-----CCAUCuCCu -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 88666 | 0.67 | 0.675861 |
Target: 5'- aUGGCcaCCAGGCCCGCGGccguGAGGc -3' miRNA: 3'- cACCG--GGUCUGGGCGCUccauCUCCu -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 102428 | 0.67 | 0.675861 |
Target: 5'- -gGGCCUccaggggacugGGGCCCGCGAacagcauacccgGGUacgggugggcgGGAGGAg -3' miRNA: 3'- caCCGGG-----------UCUGGGCGCU------------CCA-----------UCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 137461 | 0.67 | 0.675861 |
Target: 5'- --cGCCCGGAaaUCgGCGGGGguuggGGAGGGg -3' miRNA: 3'- cacCGGGUCU--GGgCGCUCCa----UCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 23873 | 0.67 | 0.665969 |
Target: 5'- -cGGCCUcugggGGGCgCC-CGAGGcGGAGGAg -3' miRNA: 3'- caCCGGG-----UCUG-GGcGCUCCaUCUCCU- -5' |
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5415 | 5' | -60.5 | NC_001798.1 | + | 57535 | 0.67 | 0.665969 |
Target: 5'- uGUGGUUCGGGgggcggaugcguUCCGCGGGGacgcGGAGGGg -3' miRNA: 3'- -CACCGGGUCU------------GGGCGCUCCa---UCUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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