miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5415 5' -60.5 NC_001798.1 + 34127 0.66 0.735171
Target:  5'- -gGGCCC-GACCCGCGccugcccccccGGGaacgacgacggggggGGGGGAa -3'
miRNA:   3'- caCCGGGuCUGGGCGC-----------UCCa--------------UCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 69163 0.66 0.734219
Target:  5'- -cGGCCgGGcggaGCCCgaugGCGggccAGGUGGGGGAg -3'
miRNA:   3'- caCCGGgUC----UGGG----CGC----UCCAUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 58983 0.66 0.734219
Target:  5'- -cGGCggCCGGGCgaaCGCGGGGggggcgcGGAGGAa -3'
miRNA:   3'- caCCG--GGUCUGg--GCGCUCCa------UCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 15324 0.66 0.734219
Target:  5'- -cGGCCgaGGGCCCcgGCGcGGUAGcGGGGg -3'
miRNA:   3'- caCCGGg-UCUGGG--CGCuCCAUC-UCCU- -5'
5415 5' -60.5 NC_001798.1 + 111906 0.66 0.724653
Target:  5'- gGUGcGCCUGGGCCaggGCGAauacGUAGGGGGa -3'
miRNA:   3'- -CAC-CGGGUCUGGg--CGCUc---CAUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 122095 0.66 0.724653
Target:  5'- -gGGCCUGGAgCCGCccGGcGGGGGGc -3'
miRNA:   3'- caCCGGGUCUgGGCGcuCCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 147026 0.66 0.724653
Target:  5'- -gGGCCgGGGCuuggCCGcCGAGGUgcgccccggccGGAGGGg -3'
miRNA:   3'- caCCGGgUCUG----GGC-GCUCCA-----------UCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 15058 0.66 0.724653
Target:  5'- -gGGCCCGGGgCgCGCGGGG-GGuGGu -3'
miRNA:   3'- caCCGGGUCUgG-GCGCUCCaUCuCCu -5'
5415 5' -60.5 NC_001798.1 + 35404 0.66 0.720805
Target:  5'- -cGGCCgcCGGauGCCCGCGGGGgccuaaugcggcgGGAGGc -3'
miRNA:   3'- caCCGG--GUC--UGGGCGCUCCa------------UCUCCu -5'
5415 5' -60.5 NC_001798.1 + 122679 0.66 0.715012
Target:  5'- uUGGCCCccACCagaGCGAguGGcUAGGGGAg -3'
miRNA:   3'- cACCGGGucUGGg--CGCU--CC-AUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 75855 0.66 0.705303
Target:  5'- cUGGCCCAGuuuGCCCGgGgcgaagagaugcGGGUcGAGGc -3'
miRNA:   3'- cACCGGGUC---UGGGCgC------------UCCAuCUCCu -5'
5415 5' -60.5 NC_001798.1 + 150520 0.66 0.705303
Target:  5'- -gGGCCCgAGgacACCUGUgcgGAGGaGGAGGAg -3'
miRNA:   3'- caCCGGG-UC---UGGGCG---CUCCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 2356 0.66 0.694557
Target:  5'- gGUGGUCCGugagcucggccacGGCCCGCGGGGcgcAGuAGGc -3'
miRNA:   3'- -CACCGGGU-------------CUGGGCGCUCCa--UC-UCCu -5'
5415 5' -60.5 NC_001798.1 + 34742 0.66 0.68572
Target:  5'- -gGGCCCGGgagcggggcgGCCCGgGAGGgAGAaGAa -3'
miRNA:   3'- caCCGGGUC----------UGGGCgCUCCaUCUcCU- -5'
5415 5' -60.5 NC_001798.1 + 69527 0.66 0.68572
Target:  5'- cGUGGCCCGcGAgCUCGCGcgggcuGGUGGuGGu -3'
miRNA:   3'- -CACCGGGU-CU-GGGCGCu-----CCAUCuCCu -5'
5415 5' -60.5 NC_001798.1 + 88666 0.67 0.675861
Target:  5'- aUGGCcaCCAGGCCCGCGGccguGAGGc -3'
miRNA:   3'- cACCG--GGUCUGGGCGCUccauCUCCu -5'
5415 5' -60.5 NC_001798.1 + 102428 0.67 0.675861
Target:  5'- -gGGCCUccaggggacugGGGCCCGCGAacagcauacccgGGUacgggugggcgGGAGGAg -3'
miRNA:   3'- caCCGGG-----------UCUGGGCGCU------------CCA-----------UCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 137461 0.67 0.675861
Target:  5'- --cGCCCGGAaaUCgGCGGGGguuggGGAGGGg -3'
miRNA:   3'- cacCGGGUCU--GGgCGCUCCa----UCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 23873 0.67 0.665969
Target:  5'- -cGGCCUcugggGGGCgCC-CGAGGcGGAGGAg -3'
miRNA:   3'- caCCGGG-----UCUG-GGcGCUCCaUCUCCU- -5'
5415 5' -60.5 NC_001798.1 + 57535 0.67 0.665969
Target:  5'- uGUGGUUCGGGgggcggaugcguUCCGCGGGGacgcGGAGGGg -3'
miRNA:   3'- -CACCGGGUCU------------GGGCGCUCCa---UCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.