miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 3' -59.7 NC_001798.1 + 123409 0.65 0.805568
Target:  5'- cGG-GAGCCGCggccccgccggguCACCGGGGcgCCCc- -3'
miRNA:   3'- cCCgCUUGGUG-------------GUGGCCCCaaGGGuc -5'
5494 3' -59.7 NC_001798.1 + 122116 0.71 0.482736
Target:  5'- gGGGCGcuUUGCCAgCCGGGGgggccCCCGGg -3'
miRNA:   3'- -CCCGCuuGGUGGU-GGCCCCaa---GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 120393 0.7 0.577761
Target:  5'- cGGGCGAugU-CCGCgGGGGccgaUCCCGu -3'
miRNA:   3'- -CCCGCUugGuGGUGgCCCCa---AGGGUc -5'
5494 3' -59.7 NC_001798.1 + 120337 0.66 0.797817
Target:  5'- -uGCGAAaCGCC-CCGGGGUgcagCgCCAGc -3'
miRNA:   3'- ccCGCUUgGUGGuGGCCCCAa---G-GGUC- -5'
5494 3' -59.7 NC_001798.1 + 117512 0.67 0.724631
Target:  5'- uGGCGGGaaACCgGCUGGGGccggCCCAGc -3'
miRNA:   3'- cCCGCUUggUGG-UGGCCCCaa--GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 114681 0.67 0.724631
Target:  5'- cGGGCGccUgGCgACCaGGGUUgCCCGGg -3'
miRNA:   3'- -CCCGCuuGgUGgUGGcCCCAA-GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 111562 0.69 0.63682
Target:  5'- cGGCGuagaacacCCACCACagcucccugagCGGGGggCCCGGc -3'
miRNA:   3'- cCCGCuu------GGUGGUG-----------GCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 111085 0.66 0.77029
Target:  5'- cGGGCGAgacggACCcCC-CCGGGGUcaggcguugcgagUCCaCAa -3'
miRNA:   3'- -CCCGCU-----UGGuGGuGGCCCCA-------------AGG-GUc -5'
5494 3' -59.7 NC_001798.1 + 108667 0.66 0.762082
Target:  5'- cGGcCGAcgcaacgcGCCGCCcCCGGGGccgCCCGc -3'
miRNA:   3'- cCC-GCU--------UGGUGGuGGCCCCaa-GGGUc -5'
5494 3' -59.7 NC_001798.1 + 106720 0.67 0.734126
Target:  5'- cGGCGucccguccuAGCCAUCGCCaGGGGgccUCCGGa -3'
miRNA:   3'- cCCGC---------UUGGUGGUGG-CCCCaa-GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 106097 0.66 0.797817
Target:  5'- cGGCGAcccggcgccGCgACCGCCGGGucugcggUUCCGGc -3'
miRNA:   3'- cCCGCU---------UGgUGGUGGCCCca-----AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 104546 0.68 0.676212
Target:  5'- cGGUGGGCCACguCGUCGGGGUUCaCgCGGg -3'
miRNA:   3'- cCCGCUUGGUG--GUGGCCCCAAG-G-GUC- -5'
5494 3' -59.7 NC_001798.1 + 104326 0.69 0.626945
Target:  5'- -aGCGAugGCCuCCGCCGGGacggcUCCCGGg -3'
miRNA:   3'- ccCGCU--UGGuGGUGGCCCca---AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 102499 0.77 0.243634
Target:  5'- gGGGaCGGGCCGgCGCCGGGGUgUCCgUAGg -3'
miRNA:   3'- -CCC-GCUUGGUgGUGGCCCCA-AGG-GUC- -5'
5494 3' -59.7 NC_001798.1 + 102240 0.73 0.412458
Target:  5'- gGGGCGGGCC-UCGCCcGGGUaauacgggaagUCCCGGu -3'
miRNA:   3'- -CCCGCUUGGuGGUGGcCCCA-----------AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 101952 0.68 0.676212
Target:  5'- uGGGgGGACCGCC-CCGGauagaGGaggcCCCGGg -3'
miRNA:   3'- -CCCgCUUGGUGGuGGCC-----CCaa--GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 98629 0.7 0.538063
Target:  5'- cGGGCGGcgugGCCGCgACCgucgcggcgaacgGGGGUcccgccUCCCGGc -3'
miRNA:   3'- -CCCGCU----UGGUGgUGG-------------CCCCA------AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 97476 0.66 0.789073
Target:  5'- gGGGCcGGCggCGCgACCGGGGgggCCgAGg -3'
miRNA:   3'- -CCCGcUUG--GUGgUGGCCCCaa-GGgUC- -5'
5494 3' -59.7 NC_001798.1 + 96352 0.68 0.666395
Target:  5'- cGGCGGcACCugCgGCCGGGGcuggaggCUCAGg -3'
miRNA:   3'- cCCGCU-UGGugG-UGGCCCCaa-----GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 94256 0.68 0.666395
Target:  5'- uGGCccuGAGCCaguGCCACgGGGuGUUCgCCGGg -3'
miRNA:   3'- cCCG---CUUGG---UGGUGgCCC-CAAG-GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.