Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5504 | 3' | -57.6 | NC_001798.1 | + | 150579 | 0.66 | 0.886427 |
Target: 5'- gGGGCGgcGCGGa-GACGGCGg-GGGAg -3' miRNA: 3'- -CCCGCacUGCCagCUGUCGUagCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 28787 | 0.66 | 0.886427 |
Target: 5'- aGGCG--GCGG-CGGCGGCGcgCGGGu -3' miRNA: 3'- cCCGCacUGCCaGCUGUCGUa-GCCCu -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 42198 | 0.66 | 0.884407 |
Target: 5'- gGGGCGUGaaaguggaagcgccGCgGGUCGGCGuGCG-CGGcGAc -3' miRNA: 3'- -CCCGCAC--------------UG-CCAGCUGU-CGUaGCC-CU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 114869 | 0.66 | 0.87962 |
Target: 5'- cGGGCG-GcCGGUCGACGGgGUgcUGGu- -3' miRNA: 3'- -CCCGCaCuGCCAGCUGUCgUA--GCCcu -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 102384 | 0.66 | 0.87962 |
Target: 5'- -cGCcUGGCGGUCGGCGGCGaUGGc- -3' miRNA: 3'- ccCGcACUGCCAGCUGUCGUaGCCcu -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 2565 | 0.66 | 0.87962 |
Target: 5'- gGGGCGgccgcggGGCGGggggCGuccgcGCGGCucuucuUCGGGGg -3' miRNA: 3'- -CCCGCa------CUGCCa---GC-----UGUCGu-----AGCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 73650 | 0.66 | 0.878928 |
Target: 5'- uGGGCGgGGgGGUucgggCGGCGGaaacaacaguacuCAUCGGGAc -3' miRNA: 3'- -CCCGCaCUgCCA-----GCUGUC-------------GUAGCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 151789 | 0.66 | 0.877537 |
Target: 5'- aGGCGUG-CGGggCGGCgggcugcuugacaaAGCAaCGGGGg -3' miRNA: 3'- cCCGCACuGCCa-GCUG--------------UCGUaGCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 127275 | 0.66 | 0.872604 |
Target: 5'- cGGGC-UGGCGGUCGAUcucuacGCccUGGGGc -3' miRNA: 3'- -CCCGcACUGCCAGCUGu-----CGuaGCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 45928 | 0.66 | 0.872604 |
Target: 5'- gGGGgGUGGCGGUC----GCGUCcGGAa -3' miRNA: 3'- -CCCgCACUGCCAGcuguCGUAGcCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 138505 | 0.66 | 0.865383 |
Target: 5'- aGGGCGUGGCacgCGACGaucUCGGGGc -3' miRNA: 3'- -CCCGCACUGccaGCUGUcguAGCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 21731 | 0.66 | 0.865383 |
Target: 5'- cGGUGUGccccUGGUgCGGCGGCGacCGGGAc -3' miRNA: 3'- cCCGCACu---GCCA-GCUGUCGUa-GCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 27391 | 0.66 | 0.865383 |
Target: 5'- aGGGCGa-GCGGUggugCGACuGGCGucuUCGGGGg -3' miRNA: 3'- -CCCGCacUGCCA----GCUG-UCGU---AGCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 144575 | 0.66 | 0.865383 |
Target: 5'- aGGGCGagGACGGgCGGCuggguGGCGagGGGc -3' miRNA: 3'- -CCCGCa-CUGCCaGCUG-----UCGUagCCCu -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 139363 | 0.66 | 0.865383 |
Target: 5'- cGGCGUccGGCGGg-GAgGGCucgCGGGAc -3' miRNA: 3'- cCCGCA--CUGCCagCUgUCGua-GCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 26963 | 0.66 | 0.857962 |
Target: 5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3' miRNA: 3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 26844 | 0.66 | 0.857962 |
Target: 5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3' miRNA: 3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 26874 | 0.66 | 0.857962 |
Target: 5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3' miRNA: 3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 26814 | 0.66 | 0.857962 |
Target: 5'- cGGGCGggcGGgGGUCG--GGCGggCGGGGg -3' miRNA: 3'- -CCCGCa--CUgCCAGCugUCGUa-GCCCU- -5' |
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5504 | 3' | -57.6 | NC_001798.1 | + | 3313 | 0.66 | 0.857962 |
Target: 5'- cGGCaacggGGCGG-CGGCGGCggCGGGc -3' miRNA: 3'- cCCGca---CUGCCaGCUGUCGuaGCCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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