miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 117672 0.69 0.879032
Target:  5'- gCGggGACGcgcGGCCGgCGGCGugUa-- -3'
miRNA:   3'- -GCuuCUGCu--CCGGCgGUUGCugAagg -5'
5511 3' -53.9 NC_001798.1 + 116427 0.72 0.760915
Target:  5'- gCGcGGcCGAcGCCGCCGACGACcggCCg -3'
miRNA:   3'- -GCuUCuGCUcCGGCGGUUGCUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 115708 0.69 0.899345
Target:  5'- uCGcGGGCGuGGCCGacgucgagcuucCCGGCGGCgaagUCCc -3'
miRNA:   3'- -GCuUCUGCuCCGGC------------GGUUGCUGa---AGG- -5'
5511 3' -53.9 NC_001798.1 + 113820 0.67 0.947618
Target:  5'- uCGggGACaGAGGaCGCCGGCcgg-UCCu -3'
miRNA:   3'- -GCuuCUG-CUCCgGCGGUUGcugaAGG- -5'
5511 3' -53.9 NC_001798.1 + 113122 0.68 0.933667
Target:  5'- uGGuAGACGAGGCCGCguGUGGCg--- -3'
miRNA:   3'- gCU-UCUGCUCCGGCGguUGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 111950 0.66 0.969341
Target:  5'- gCGAAGcGCGAGGaaaUGUUGACGAUcgCCg -3'
miRNA:   3'- -GCUUC-UGCUCCg--GCGGUUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 108701 0.7 0.832632
Target:  5'- gCGggGAcacCGAGGCauCCGACGACgaaCCu -3'
miRNA:   3'- -GCuuCU---GCUCCGgcGGUUGCUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 107410 0.68 0.923178
Target:  5'- gGAGGACuGGGGCCGgCUGACGGgggucgCCg -3'
miRNA:   3'- gCUUCUG-CUCCGGC-GGUUGCUgaa---GG- -5'
5511 3' -53.9 NC_001798.1 + 105743 0.66 0.974883
Target:  5'- -cGGGugGGuGUCGCCGGCGACaaaugagUCCc -3'
miRNA:   3'- gcUUCugCUcCGGCGGUUGCUGa------AGG- -5'
5511 3' -53.9 NC_001798.1 + 105608 0.74 0.671769
Target:  5'- uCGAGGGCGgcGGGCgGgCGACGACggcgcUCCg -3'
miRNA:   3'- -GCUUCUGC--UCCGgCgGUUGCUGa----AGG- -5'
5511 3' -53.9 NC_001798.1 + 105392 0.69 0.886029
Target:  5'- gGAGGGCGgcguucuccaGGGCCGCC-GCGGCcgCg -3'
miRNA:   3'- gCUUCUGC----------UCCGGCGGuUGCUGaaGg -5'
5511 3' -53.9 NC_001798.1 + 105190 0.69 0.886716
Target:  5'- gCGgcGGCGGGGcCCGCgGugGGCgacggcgcugccccgUCCg -3'
miRNA:   3'- -GCuuCUGCUCC-GGCGgUugCUGa--------------AGG- -5'
5511 3' -53.9 NC_001798.1 + 104587 0.67 0.95575
Target:  5'- uCGggGAacgucgccCGGGGCCGCCGGuagcaccccgUGGCgcaCCa -3'
miRNA:   3'- -GCuuCU--------GCUCCGGCGGUU----------GCUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 104088 0.7 0.864385
Target:  5'- uGAGGcgcACGAGcGCCGCCuggcgggcgcccGACGACauaUCCa -3'
miRNA:   3'- gCUUC---UGCUC-CGGCGG------------UUGCUGa--AGG- -5'
5511 3' -53.9 NC_001798.1 + 103462 0.66 0.962979
Target:  5'- cCGGAGGCaGGGCCGCaCGcacCGugUcugggUCCa -3'
miRNA:   3'- -GCUUCUGcUCCGGCG-GUu--GCugA-----AGG- -5'
5511 3' -53.9 NC_001798.1 + 102497 0.69 0.886029
Target:  5'- gCGggGACG-GGCCggcGCCGGgGugU-CCg -3'
miRNA:   3'- -GCuuCUGCuCCGG---CGGUUgCugAaGG- -5'
5511 3' -53.9 NC_001798.1 + 101844 0.66 0.959475
Target:  5'- gGGAGGCGuGGGUC-CCGGCGGCggCg -3'
miRNA:   3'- gCUUCUGC-UCCGGcGGUUGCUGaaGg -5'
5511 3' -53.9 NC_001798.1 + 101209 0.75 0.590077
Target:  5'- aCGAGGACGAGGCCGgaGACGAa---- -3'
miRNA:   3'- -GCUUCUGCUCCGGCggUUGCUgaagg -5'
5511 3' -53.9 NC_001798.1 + 100791 0.68 0.933667
Target:  5'- gGggGGCGGgugucGGCCGUCucggGCGugUccUCCu -3'
miRNA:   3'- gCuuCUGCU-----CCGGCGGu---UGCugA--AGG- -5'
5511 3' -53.9 NC_001798.1 + 100211 0.67 0.95575
Target:  5'- uCGGAGACGucauGGCCGUCuccACGuGCgugCCc -3'
miRNA:   3'- -GCUUCUGCu---CCGGCGGu--UGC-UGaa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.