miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5521 3' -62.4 NC_001798.1 + 115552 0.66 0.706712
Target:  5'- gCGCGGACaugcagcaGCGUUuUCUgaaCGCCugGCGGCa -3'
miRNA:   3'- -GCGCCUGc-------CGCAGcAGA---GCGG--CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 64822 0.66 0.706712
Target:  5'- cCGCGGGCuGGCGuUCGaaaagCGCUcccagugaaaGCGGCc -3'
miRNA:   3'- -GCGCCUG-CCGC-AGCaga--GCGG----------CGCCG- -5'
5521 3' -62.4 NC_001798.1 + 39630 0.66 0.706712
Target:  5'- gGCGGGguuuUGGUGUggaGUCggcgcCGCCGgGGCc -3'
miRNA:   3'- gCGCCU----GCCGCAg--CAGa----GCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 111135 0.66 0.706712
Target:  5'- aGCaGGGCGGCGcUGUCggcccgcgCGUCGCuccccaccGGCa -3'
miRNA:   3'- gCG-CCUGCCGCaGCAGa-------GCGGCG--------CCG- -5'
5521 3' -62.4 NC_001798.1 + 31150 0.66 0.706712
Target:  5'- gCGgGGGCGGCGgugCGggggCGacCCGCGGa -3'
miRNA:   3'- -GCgCCUGCCGCa--GCaga-GC--GGCGCCg -5'
5521 3' -62.4 NC_001798.1 + 53967 0.66 0.698226
Target:  5'- uGCGGGCGGCGgucagcgaCGUCcugggccaccugacgCGCC-UGGCc -3'
miRNA:   3'- gCGCCUGCCGCa-------GCAGa--------------GCGGcGCCG- -5'
5521 3' -62.4 NC_001798.1 + 95305 0.66 0.69728
Target:  5'- uGUGcGCGGCGUCGagUCUCGggggCGgGGCc -3'
miRNA:   3'- gCGCcUGCCGCAGC--AGAGCg---GCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 134678 0.66 0.69728
Target:  5'- aGCGGgucACGGCG-CGggugCUgcUGCCGCgcGGCu -3'
miRNA:   3'- gCGCC---UGCCGCaGCa---GA--GCGGCG--CCG- -5'
5521 3' -62.4 NC_001798.1 + 4400 0.66 0.69728
Target:  5'- gGUGGuguCGGCGgggCGcCggggGUCGCGGCg -3'
miRNA:   3'- gCGCCu--GCCGCa--GCaGag--CGGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 43263 0.66 0.69728
Target:  5'- uCGCcGGgGGCGUCGUgcccugcugCUcCGUgGCGGCc -3'
miRNA:   3'- -GCGcCUgCCGCAGCA---------GA-GCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 129062 0.66 0.69728
Target:  5'- gGUGGaguuaaauaGCGGCGUUGUCUCGgaggugcuuCUGUuuGGCg -3'
miRNA:   3'- gCGCC---------UGCCGCAGCAGAGC---------GGCG--CCG- -5'
5521 3' -62.4 NC_001798.1 + 121253 0.66 0.694441
Target:  5'- gGCGG-CGGCGgggGUCcCGCuguccgcccucgugCGCGGCc -3'
miRNA:   3'- gCGCCuGCCGCag-CAGaGCG--------------GCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 154154 0.66 0.6878
Target:  5'- gGCGGGCGGC-UgGgCUCGgCGUaGGCc -3'
miRNA:   3'- gCGCCUGCCGcAgCaGAGCgGCG-CCG- -5'
5521 3' -62.4 NC_001798.1 + 4104 0.66 0.6878
Target:  5'- gGCGGGCucggcccugGGCGgg--CUCgGCCGgGGCg -3'
miRNA:   3'- gCGCCUG---------CCGCagcaGAG-CGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 4364 0.66 0.6878
Target:  5'- gGCGGGgGGCG-CGcCg-GCgGCGGUg -3'
miRNA:   3'- gCGCCUgCCGCaGCaGagCGgCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 36305 0.66 0.6878
Target:  5'- gGUGuGGCGGCGgggCG-CggGCCGgGGCc -3'
miRNA:   3'- gCGC-CUGCCGCa--GCaGagCGGCgCCG- -5'
5521 3' -62.4 NC_001798.1 + 131158 0.66 0.6878
Target:  5'- gGgGGACGGCuacacccccgCGcacCUCGaCCGUGGCg -3'
miRNA:   3'- gCgCCUGCCGca--------GCa--GAGC-GGCGCCG- -5'
5521 3' -62.4 NC_001798.1 + 134470 0.66 0.6878
Target:  5'- gCGCGGuuGGCGUgGgcgCGCC-UGGCc -3'
miRNA:   3'- -GCGCCugCCGCAgCagaGCGGcGCCG- -5'
5521 3' -62.4 NC_001798.1 + 57042 0.66 0.6878
Target:  5'- aCGCGGACgGGCG--GUC-CGUC-CGGCc -3'
miRNA:   3'- -GCGCCUG-CCGCagCAGaGCGGcGCCG- -5'
5521 3' -62.4 NC_001798.1 + 65394 0.66 0.686849
Target:  5'- -cUGGAUGGgGaUCGUUUCGCCGaaccccaUGGCc -3'
miRNA:   3'- gcGCCUGCCgC-AGCAGAGCGGC-------GCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.