Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5521 | 5' | -59.8 | NC_001798.1 | + | 148840 | 0.71 | 0.428819 |
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Target: 5'- aGGCCUCGggGGUGGGgGcGGCUu-- -3' miRNA: 3'- aCCGGAGCuaCCACCUgCuCCGGcaa -5' |
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| 5521 | 5' | -59.8 | NC_001798.1 | + | 120564 | 0.71 | 0.420135 |
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Target: 5'- aGGCCgcugUUGGUGGUGGugGAggGGCgGUa -3' miRNA: 3'- aCCGG----AGCUACCACCugCU--CCGgCAa -5' |
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| 5521 | 5' | -59.8 | NC_001798.1 | + | 22748 | 0.72 | 0.411559 |
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Target: 5'- gGGCCgaggucgCGAUGGcGGACGAGGaCGg- -3' miRNA: 3'- aCCGGa------GCUACCaCCUGCUCCgGCaa -5' |
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| 5521 | 5' | -59.8 | NC_001798.1 | + | 42616 | 0.72 | 0.394735 |
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Target: 5'- cGGCCUCGucguccgGGAgGGGGCCGUg -3' miRNA: 3'- aCCGGAGCuacca--CCUgCUCCGGCAa -5' |
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| 5521 | 5' | -59.8 | NC_001798.1 | + | 93146 | 0.72 | 0.386492 |
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Target: 5'- cUGGCCUCGGugaUGGcGGGCGAcGCCGc- -3' miRNA: 3'- -ACCGGAGCU---ACCaCCUGCUcCGGCaa -5' |
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| 5521 | 5' | -59.8 | NC_001798.1 | + | 57454 | 0.74 | 0.310507 |
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Target: 5'- gGGCC-CGGucuUGGgGGGCGGGGCCGg- -3' miRNA: 3'- aCCGGaGCU---ACCaCCUGCUCCGGCaa -5' |
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| 5521 | 5' | -59.8 | NC_001798.1 | + | 23040 | 1.04 | 0.002507 |
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Target: 5'- cUGGCCUCGAUGGUGGACGAGGCCGUUc -3' miRNA: 3'- -ACCGGAGCUACCACCUGCUCCGGCAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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