miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5534 3' -51 NC_001806.1 + 30636 0.66 0.995036
Target:  5'- aGGGccGGGGGGG-C-GCGGCCAGGGu -3'
miRNA:   3'- -CCCucUUUCCCCaGaCGUUGGUUUCc -5'
5534 3' -51 NC_001806.1 + 109537 0.66 0.995036
Target:  5'- cGGGAGccGGGGGaggUGCGccuggGCCAGGGc -3'
miRNA:   3'- -CCCUCuuUCCCCag-ACGU-----UGGUUUCc -5'
5534 3' -51 NC_001806.1 + 99713 0.66 0.995036
Target:  5'- gGGGAGGAccguAGGGGgcgCUGUGuggUggGGGg -3'
miRNA:   3'- -CCCUCUU----UCCCCa--GACGUug-GuuUCC- -5'
5534 3' -51 NC_001806.1 + 143362 0.66 0.995036
Target:  5'- nGGAGGGacGGGGGcCgGCAgACCGAcGGc -3'
miRNA:   3'- cCCUCUU--UCCCCaGaCGU-UGGUUuCC- -5'
5534 3' -51 NC_001806.1 + 20625 0.66 0.994234
Target:  5'- cGGGGccGGGGGUU--CGACCAAcGGg -3'
miRNA:   3'- cCCUCuuUCCCCAGacGUUGGUUuCC- -5'
5534 3' -51 NC_001806.1 + 111343 0.66 0.994234
Target:  5'- cGGGGggGGGGGUauauaaGGCCu-GGGa -3'
miRNA:   3'- cCCUCuuUCCCCAgacg--UUGGuuUCC- -5'
5534 3' -51 NC_001806.1 + 5230 0.66 0.994234
Target:  5'- uGGGGGGAGGGGG-Cga-GACCcacGGa -3'
miRNA:   3'- -CCCUCUUUCCCCaGacgUUGGuuuCC- -5'
5534 3' -51 NC_001806.1 + 113394 0.66 0.994234
Target:  5'- cGGGAcgcccGGGGcCUGgAGCUggGGGu -3'
miRNA:   3'- -CCCUcuuu-CCCCaGACgUUGGuuUCC- -5'
5534 3' -51 NC_001806.1 + 147836 0.66 0.994234
Target:  5'- gGGGAGAGgccGGGGGggagucgCUGaucACUAuGGGg -3'
miRNA:   3'- -CCCUCUU---UCCCCa------GACgu-UGGUuUCC- -5'
5534 3' -51 NC_001806.1 + 149417 0.66 0.993331
Target:  5'- -uGAGucAGGGGGUCccacgGCGACCccGGGc -3'
miRNA:   3'- ccCUCu-UUCCCCAGa----CGUUGGuuUCC- -5'
5534 3' -51 NC_001806.1 + 84069 0.66 0.993331
Target:  5'- uGGGAGuc-GGGGccccagCUGCGcgcuGCCGcgGAGGc -3'
miRNA:   3'- -CCCUCuuuCCCCa-----GACGU----UGGU--UUCC- -5'
5534 3' -51 NC_001806.1 + 34750 0.66 0.993331
Target:  5'- aGGGGAucaAAGGGGg--GCAaaGCCGgcGGg -3'
miRNA:   3'- cCCUCU---UUCCCCagaCGU--UGGUuuCC- -5'
5534 3' -51 NC_001806.1 + 51094 0.66 0.992319
Target:  5'- uGGGAGAcGAGGGGgccgccgccCUGCGGgCGcacgugucGGGGa -3'
miRNA:   3'- -CCCUCU-UUCCCCa--------GACGUUgGU--------UUCC- -5'
5534 3' -51 NC_001806.1 + 71540 0.66 0.992319
Target:  5'- cGGGGggGGGGGUggaaGACCAAGa- -3'
miRNA:   3'- cCCUCuuUCCCCAgacgUUGGUUUcc -5'
5534 3' -51 NC_001806.1 + 25165 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 25233 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 25199 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 25131 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 140444 0.66 0.992319
Target:  5'- uGGGGGggGGGcGGUUacuCGGCCcccGAGGc -3'
miRNA:   3'- -CCCUCuuUCC-CCAGac-GUUGGu--UUCC- -5'
5534 3' -51 NC_001806.1 + 25369 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.