miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5536 5' -67.2 NC_001806.1 + 46983 0.66 0.398388
Target:  5'- cGCuGCCCaCUUCCCCccauaaGGUCCGUCCg-- -3'
miRNA:   3'- aUG-CGGG-GGAGGGG------CCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 137800 0.66 0.397586
Target:  5'- aACGCCCuguaccacaCC-CCCCaguacgcGGCCCGCCUg-- -3'
miRNA:   3'- aUGCGGG---------GGaGGGG-------CCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 90019 0.66 0.382531
Target:  5'- -cCGCCCCC-CCCCGGauuuugaCGCUCg-- -3'
miRNA:   3'- auGCGGGGGaGGGGCCgg-----GCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 90555 0.66 0.382531
Target:  5'- aGCGCCUcggCCUggaCCCGGaCCgCGCCCUc- -3'
miRNA:   3'- aUGCGGG---GGAg--GGGCC-GG-GCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 96517 0.66 0.382531
Target:  5'- gGgGCCCugCCaCUCCGGCgCCGCCCg-- -3'
miRNA:   3'- aUgCGGG--GGaGGGGCCG-GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 52662 0.66 0.382531
Target:  5'- -cCGCCCCUcCCCCGaCCuCGCCUa-- -3'
miRNA:   3'- auGCGGGGGaGGGGCcGG-GCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 81915 0.66 0.382531
Target:  5'- gGCcaCCCCCagCCCGGCCUcgGCCCc-- -3'
miRNA:   3'- aUGc-GGGGGagGGGCCGGG--CGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 47193 0.66 0.382531
Target:  5'- -cCGCCCCCcCgCCCGGCCgGggguCCCa-- -3'
miRNA:   3'- auGCGGGGGaG-GGGCCGGgC----GGGaaa -5'
5536 5' -67.2 NC_001806.1 + 150950 0.66 0.374762
Target:  5'- gGCGCCggaaCCgagCCCgguCGGCCCGCUCg-- -3'
miRNA:   3'- aUGCGGg---GGa--GGG---GCCGGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 147148 0.66 0.374762
Target:  5'- -uUGUCuCCCUCCCagggcaccgaCGGcCCCGCCCg-- -3'
miRNA:   3'- auGCGG-GGGAGGG----------GCC-GGGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 112009 0.66 0.374762
Target:  5'- aACGCCgCCUUCagCCUGGCCaccgaggccauCGCCCUg- -3'
miRNA:   3'- aUGCGG-GGGAG--GGGCCGG-----------GCGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 91770 0.66 0.374762
Target:  5'- cUACGCCgCCUUCUCGGCCCugaaGCgCg-- -3'
miRNA:   3'- -AUGCGGgGGAGGGGCCGGG----CGgGaaa -5'
5536 5' -67.2 NC_001806.1 + 84809 0.66 0.367099
Target:  5'- -cCGaCCCCCaucgccgcggCUCCGGCCCggGCCCUa- -3'
miRNA:   3'- auGC-GGGGGa---------GGGGCCGGG--CGGGAaa -5'
5536 5' -67.2 NC_001806.1 + 46663 0.66 0.367099
Target:  5'- cGCGCCCCaccgagcgaccuCgagCCCCaGCCCGCuCCg-- -3'
miRNA:   3'- aUGCGGGG------------Ga--GGGGcCGGGCG-GGaaa -5'
5536 5' -67.2 NC_001806.1 + 147991 0.66 0.367099
Target:  5'- gACGCCCCCcgcggcgCCgCGGCUCGCgaCUg- -3'
miRNA:   3'- aUGCGGGGGa------GGgGCCGGGCGg-GAaa -5'
5536 5' -67.2 NC_001806.1 + 96233 0.66 0.360296
Target:  5'- aGCGCCCCCgacggcuguaucggcCCCCGGUCgGUCgUg- -3'
miRNA:   3'- aUGCGGGGGa--------------GGGGCCGGgCGGgAaa -5'
5536 5' -67.2 NC_001806.1 + 69819 0.66 0.359546
Target:  5'- ---aCCCCCaccaCCCCGGCCaCGCCgCUg- -3'
miRNA:   3'- augcGGGGGa---GGGGCCGG-GCGG-GAaa -5'
5536 5' -67.2 NC_001806.1 + 19834 0.66 0.359546
Target:  5'- cGCGuccCCCCCUCCUCcGCCCaCCCa-- -3'
miRNA:   3'- aUGC---GGGGGAGGGGcCGGGcGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 24803 0.66 0.359546
Target:  5'- gGgGCCCUg-CCgCCGGCgCCGCCCg-- -3'
miRNA:   3'- aUgCGGGGgaGG-GGCCG-GGCGGGaaa -5'
5536 5' -67.2 NC_001806.1 + 6821 0.66 0.359546
Target:  5'- aGCGUCCCCugcugcgcucUCCCgGGCugCUGCCCg-- -3'
miRNA:   3'- aUGCGGGGG----------AGGGgCCG--GGCGGGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.