miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5538 3' -66.7 NC_001806.1 + 89265 0.65 0.482298
Target:  5'- cCGGCuGGCUCCgcgagGGCCGGcGGGCgcaaaaaacccggaCGCcGCc -3'
miRNA:   3'- -GCCG-CCGAGG-----UCGGCC-CCUG--------------GCGcCG- -5'
5538 3' -66.7 NC_001806.1 + 107015 0.66 0.476175
Target:  5'- uCGcGCGcGCUugCCGGguuggccgcCCGcGGGGCCGCGGg -3'
miRNA:   3'- -GC-CGC-CGA--GGUC---------GGC-CCCUGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 147107 0.66 0.476175
Target:  5'- -cGCGGC-CCAGaagcagcgCGGGGGCCGagggaGGUu -3'
miRNA:   3'- gcCGCCGaGGUCg-------GCCCCUGGCg----CCG- -5'
5538 3' -66.7 NC_001806.1 + 87669 0.66 0.476175
Target:  5'- cCGGCGGCguagUAGgCGGGGAugUCGCGa- -3'
miRNA:   3'- -GCCGCCGag--GUCgGCCCCU--GGCGCcg -5'
5538 3' -66.7 NC_001806.1 + 148075 0.66 0.475304
Target:  5'- cCGuGUGGC-CCGaugggcGCCGaGGGgggcgcuguccgaGCCGCGGCc -3'
miRNA:   3'- -GC-CGCCGaGGU------CGGC-CCC-------------UGGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 144999 0.66 0.467496
Target:  5'- aGG-GGCcCCGGcCCGGGGccccacaacgGCC-CGGCg -3'
miRNA:   3'- gCCgCCGaGGUC-GGCCCC----------UGGcGCCG- -5'
5538 3' -66.7 NC_001806.1 + 24117 0.66 0.467496
Target:  5'- -cGCGGgaCCuggccuucGCCGGGG-CCGUGGa -3'
miRNA:   3'- gcCGCCgaGGu-------CGGCCCCuGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 77113 0.66 0.467496
Target:  5'- gGGCGccaagaGCgccgagCgGGCCGGGG-CCGUGGa -3'
miRNA:   3'- gCCGC------CGa-----GgUCGGCCCCuGGCGCCg -5'
5538 3' -66.7 NC_001806.1 + 3458 0.66 0.467496
Target:  5'- aCGGCcacGCggCCGGCCuGGG--CGCGGCg -3'
miRNA:   3'- -GCCGc--CGa-GGUCGGcCCCugGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 76540 0.66 0.464908
Target:  5'- cCGaGCGGgUCaCGGCgGGGcugcgggaggugcuGGCCGCGcGCg -3'
miRNA:   3'- -GC-CGCCgAG-GUCGgCCC--------------CUGGCGC-CG- -5'
5538 3' -66.7 NC_001806.1 + 4144 0.66 0.464047
Target:  5'- gGGCGGCUgucgCCcaggccgccguacAGCacccgccccgggggCGGGGGCC-CGGCg -3'
miRNA:   3'- gCCGCCGA----GG-------------UCG--------------GCCCCUGGcGCCG- -5'
5538 3' -66.7 NC_001806.1 + 22097 0.66 0.458899
Target:  5'- aCGGCGGCcugggcgaCAGCCgcccgggccucuGGGGGgCGCccgaGGCg -3'
miRNA:   3'- -GCCGCCGag------GUCGG------------CCCCUgGCG----CCG- -5'
5538 3' -66.7 NC_001806.1 + 43713 0.66 0.458899
Target:  5'- cCGGgGGaacCCGGUCGGGGgggauuggggugACCGaGGCg -3'
miRNA:   3'- -GCCgCCga-GGUCGGCCCC------------UGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 3334 0.66 0.458899
Target:  5'- nGGUccCUCCGGCCgcgGGGGGCUgGCGGg -3'
miRNA:   3'- gCCGccGAGGUCGG---CCCCUGG-CGCCg -5'
5538 3' -66.7 NC_001806.1 + 100308 0.66 0.458899
Target:  5'- -uGCGGCUggGGuuGGGG--CGCGGCa -3'
miRNA:   3'- gcCGCCGAggUCggCCCCugGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 95533 0.66 0.458899
Target:  5'- -aGCGGUcguuggCCAGCCuGGGGcgcugcguCCGCGaGCa -3'
miRNA:   3'- gcCGCCGa-----GGUCGG-CCCCu-------GGCGC-CG- -5'
5538 3' -66.7 NC_001806.1 + 1499 0.66 0.455484
Target:  5'- gGGCgucgucgucgGGCUCCAGCagggCGcGGGcgcaaaagucccuCCGCGGCc -3'
miRNA:   3'- gCCG----------CCGAGGUCG----GC-CCCu------------GGCGCCG- -5'
5538 3' -66.7 NC_001806.1 + 21975 0.66 0.450387
Target:  5'- cCGGCGGgUCgAGCUGGacGCCGacgcgaccucCGGCg -3'
miRNA:   3'- -GCCGCCgAGgUCGGCCccUGGC----------GCCG- -5'
5538 3' -66.7 NC_001806.1 + 15167 0.66 0.450387
Target:  5'- aCGGgaaGGC-UgGGCCcGGGGACUGgGGUa -3'
miRNA:   3'- -GCCg--CCGaGgUCGG-CCCCUGGCgCCG- -5'
5538 3' -66.7 NC_001806.1 + 59977 0.66 0.450387
Target:  5'- gGcGCGGCaccucUCUGGCCucGGGGACC-CGGg -3'
miRNA:   3'- gC-CGCCG-----AGGUCGG--CCCCUGGcGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.