miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5539 5' -58.2 NC_001806.1 + 151285 0.65 0.821527
Target:  5'- gGCCGGGGCCgggggGCggCGGCGgugggccgggccucUGGCGCCg -3'
miRNA:   3'- -UGGUCUCGGa----CGg-GUUGU--------------ACCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 145010 0.66 0.815525
Target:  5'- cCCGGGGCCccacaacgGCCCGgcGCAUGcGCugUg -3'
miRNA:   3'- uGGUCUCGGa-------CGGGU--UGUAC-CGugGg -5'
5539 5' -58.2 NC_001806.1 + 95421 0.66 0.815525
Target:  5'- gACCGucGCCgcggGCCCGggggGCA-GGgGCCCg -3'
miRNA:   3'- -UGGUcuCGGa---CGGGU----UGUaCCgUGGG- -5'
5539 5' -58.2 NC_001806.1 + 131376 0.66 0.81466
Target:  5'- cACCGaGGCCUgGCCCAugauGCAgggGGCggugaacuuuagcACCCu -3'
miRNA:   3'- -UGGUcUCGGA-CGGGU----UGUa--CCG-------------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 52020 0.66 0.812927
Target:  5'- cGCCGGuuCCUcccgcucggcggcaGCCCGGa--GGCGCCCg -3'
miRNA:   3'- -UGGUCucGGA--------------CGGGUUguaCCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 48075 0.66 0.810315
Target:  5'- aGCCAGGGgcgccguugacgaccCCU-CCCAcccuGCAUGGCaaccagGCCCg -3'
miRNA:   3'- -UGGUCUC---------------GGAcGGGU----UGUACCG------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 12764 0.66 0.80681
Target:  5'- gACCAGGG-CUGCCaggaGAC-UGcCGCCCa -3'
miRNA:   3'- -UGGUCUCgGACGGg---UUGuACcGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 113401 0.66 0.801506
Target:  5'- cCCGGGGCCUGgagcugggggugggaCgCCAcgcCAUGGCcCCCg -3'
miRNA:   3'- uGGUCUCGGAC---------------G-GGUu--GUACCGuGGG- -5'
5539 5' -58.2 NC_001806.1 + 45377 0.66 0.797939
Target:  5'- gGCCAaauGUCUGCCCcgggGGCccUGGUGCCCu -3'
miRNA:   3'- -UGGUcu-CGGACGGG----UUGu-ACCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 5867 0.66 0.797939
Target:  5'- cGCCGGAcGCCgggaCCAACGggacggcgGGCgGCCCa -3'
miRNA:   3'- -UGGUCU-CGGacg-GGUUGUa-------CCG-UGGG- -5'
5539 5' -58.2 NC_001806.1 + 147794 0.66 0.797939
Target:  5'- gGCgGGGGgCggaGCCUGGCAUgGGCGCCg -3'
miRNA:   3'- -UGgUCUCgGa--CGGGUUGUA-CCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 4746 0.66 0.788919
Target:  5'- gGCCGGGGCCcggucGCCggCGGCGUcGGCugCg -3'
miRNA:   3'- -UGGUCUCGGa----CGG--GUUGUA-CCGugGg -5'
5539 5' -58.2 NC_001806.1 + 27329 0.66 0.788919
Target:  5'- uUCGGGGCCcgGCCCAuug-GGCgggaguuaccGCCCa -3'
miRNA:   3'- uGGUCUCGGa-CGGGUuguaCCG----------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 78686 0.66 0.788919
Target:  5'- uCCuGGGCgC-GCCCGucguCGUGGCGCuCCg -3'
miRNA:   3'- uGGuCUCG-GaCGGGUu---GUACCGUG-GG- -5'
5539 5' -58.2 NC_001806.1 + 94212 0.66 0.788919
Target:  5'- gGCCGGGGCCUuucucaCCCcGCugucGGuCACCCu -3'
miRNA:   3'- -UGGUCUCGGAc-----GGGuUGua--CC-GUGGG- -5'
5539 5' -58.2 NC_001806.1 + 43500 0.66 0.788919
Target:  5'- -aCGGGGCCguggcgGCCCAucaggACAagaugcGGCGCCUg -3'
miRNA:   3'- ugGUCUCGGa-----CGGGU-----UGUa-----CCGUGGG- -5'
5539 5' -58.2 NC_001806.1 + 1414 0.66 0.788919
Target:  5'- cCCGuGGCCgagGCCCAGCGaaucccgggcGGCGCCg -3'
miRNA:   3'- uGGUcUCGGa--CGGGUUGUa---------CCGUGGg -5'
5539 5' -58.2 NC_001806.1 + 58695 0.66 0.788009
Target:  5'- -aCGGGGCCUgGCCCGugAUcGCcaacuccACCCg -3'
miRNA:   3'- ugGUCUCGGA-CGGGUugUAcCG-------UGGG- -5'
5539 5' -58.2 NC_001806.1 + 132509 0.66 0.786186
Target:  5'- cCCGGGGCCcuggcccccgucuuUGCCUuuC-UGGgGCCCg -3'
miRNA:   3'- uGGUCUCGG--------------ACGGGuuGuACCgUGGG- -5'
5539 5' -58.2 NC_001806.1 + 98879 0.66 0.786186
Target:  5'- gGCCAagcuAGCCgagGCCCGggagaugauacgguACAUGGC-CCUg -3'
miRNA:   3'- -UGGUc---UCGGa--CGGGU--------------UGUACCGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.