miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5543 5' -59.6 NC_001806.1 + 23113 0.65 0.767013
Target:  5'- -cCCUGgGCCCCgCgCUGCCgcgggacccgcgCCugCCg -3'
miRNA:   3'- uaGGAUgUGGGG-G-GACGGaa----------GGugGG- -5'
5543 5' -59.6 NC_001806.1 + 147548 0.66 0.761421
Target:  5'- -cCCgGC-CCCCCCgaGCCgcgcgCCACCg -3'
miRNA:   3'- uaGGaUGuGGGGGGa-CGGaa---GGUGGg -5'
5543 5' -59.6 NC_001806.1 + 72149 0.66 0.761421
Target:  5'- -cCCUGCG-CCCCCUGUCguacaCGCUCc -3'
miRNA:   3'- uaGGAUGUgGGGGGACGGaag--GUGGG- -5'
5543 5' -59.6 NC_001806.1 + 50923 0.66 0.761421
Target:  5'- -aUCUGCGCCCCgCCU-CCUcagCGCCCc -3'
miRNA:   3'- uaGGAUGUGGGG-GGAcGGAag-GUGGG- -5'
5543 5' -59.6 NC_001806.1 + 145930 0.66 0.761421
Target:  5'- -cCCccCACCCCUCcGCC--CCACCCc -3'
miRNA:   3'- uaGGauGUGGGGGGaCGGaaGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 7504 0.66 0.760485
Target:  5'- ---gUAUGCCCCCCUGgcgagcccagaccCCUUCUcCCCa -3'
miRNA:   3'- uaggAUGUGGGGGGAC-------------GGAAGGuGGG- -5'
5543 5' -59.6 NC_001806.1 + 114427 0.66 0.755789
Target:  5'- aAUCCUGCugaugGCCCCCCaGCaucuggaccauaCCAUCCa -3'
miRNA:   3'- -UAGGAUG-----UGGGGGGaCGgaa---------GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 24775 0.66 0.755789
Target:  5'- gGUgCUGCgcggcgacgacgacgGCCCgggggCCCUGCCgccggcgCCGCCCg -3'
miRNA:   3'- -UAgGAUG---------------UGGG-----GGGACGGaa-----GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 88293 0.66 0.752013
Target:  5'- gGUCgCUcAUGCCCCCCUcgaugGCCagguugUCCGCCg -3'
miRNA:   3'- -UAG-GA-UGUGGGGGGA-----CGGa-----AGGUGGg -5'
5543 5' -59.6 NC_001806.1 + 124357 0.66 0.752013
Target:  5'- -cCCUGCGCacaacaaaCCCCUcggucucgacgGCCcUCCACCa -3'
miRNA:   3'- uaGGAUGUGg-------GGGGA-----------CGGaAGGUGGg -5'
5543 5' -59.6 NC_001806.1 + 43756 0.66 0.752013
Target:  5'- cUCCUugggGCACCCCCacacGCCg-CC-CCCg -3'
miRNA:   3'- uAGGA----UGUGGGGGga--CGGaaGGuGGG- -5'
5543 5' -59.6 NC_001806.1 + 22677 0.66 0.752013
Target:  5'- gAUCCU-CGCCgCCCUggggcgGCUgUCCGCCg -3'
miRNA:   3'- -UAGGAuGUGG-GGGGa-----CGGaAGGUGGg -5'
5543 5' -59.6 NC_001806.1 + 20157 0.66 0.752013
Target:  5'- -aCC--CGCCCCCCgccGCCcgggcCCGCCCc -3'
miRNA:   3'- uaGGauGUGGGGGGa--CGGaa---GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 147304 0.66 0.752013
Target:  5'- gGUCCcGgGCCCaCCCUgGCCgcgCCcCCCc -3'
miRNA:   3'- -UAGGaUgUGGG-GGGA-CGGaa-GGuGGG- -5'
5543 5' -59.6 NC_001806.1 + 102816 0.66 0.752013
Target:  5'- gGUCCcgaACACCaCCCCcgacgaGCCggUCGCCCc -3'
miRNA:   3'- -UAGGa--UGUGG-GGGGa-----CGGaaGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 73472 0.66 0.752013
Target:  5'- -cCCggcCGCCgCCCUGCUggagUUUACCCu -3'
miRNA:   3'- uaGGau-GUGGgGGGACGGa---AGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 34626 0.66 0.742503
Target:  5'- -aCCaGCGCCCCCCcccCCUcaCCACCa -3'
miRNA:   3'- uaGGaUGUGGGGGGac-GGAa-GGUGGg -5'
5543 5' -59.6 NC_001806.1 + 5023 0.66 0.742503
Target:  5'- cGUCCc-CGCCCUCCUccgucuccgcGCC--CCACCCg -3'
miRNA:   3'- -UAGGauGUGGGGGGA----------CGGaaGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 5915 0.66 0.740589
Target:  5'- -gCCUugcCGCCCCCCcauugGCCggcgggcgggaCCGCCCc -3'
miRNA:   3'- uaGGAu--GUGGGGGGa----CGGaa---------GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 30468 0.66 0.732899
Target:  5'- cUCCgGCGCCgCCCCgcucCCcUCCGCCg -3'
miRNA:   3'- uAGGaUGUGG-GGGGac--GGaAGGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.