miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5544 3' -62 NC_001806.1 + 57756 0.66 0.692918
Target:  5'- gCGGCGGgAcGGGCCGccGUCCcGUCCGc -3'
miRNA:   3'- gGCCGCCgU-CUUGGCccCAGG-CAGGU- -5'
5544 3' -62 NC_001806.1 + 56656 0.66 0.667932
Target:  5'- gCCGGCGGCccgugggaucguuggGGggUCGGGGgggaCGggggCCc -3'
miRNA:   3'- -GGCCGCCG---------------UCuuGGCCCCag--GCa---GGu -5'
5544 3' -62 NC_001806.1 + 55726 0.68 0.567436
Target:  5'- gCUGGCGGCuGAcCCGGGGgaccCCGa--- -3'
miRNA:   3'- -GGCCGCCGuCUuGGCCCCa---GGCaggu -5'
5544 3' -62 NC_001806.1 + 49452 0.66 0.673719
Target:  5'- cCCGGCaGGgGGGauACCuGGGUcCCGUCg- -3'
miRNA:   3'- -GGCCG-CCgUCU--UGGcCCCA-GGCAGgu -5'
5544 3' -62 NC_001806.1 + 46467 0.67 0.596268
Target:  5'- aUGGCGGCGGuccagcuCUGGGacauGUCgCGUCCGc -3'
miRNA:   3'- gGCCGCCGUCuu-----GGCCC----CAG-GCAGGU- -5'
5544 3' -62 NC_001806.1 + 45284 0.67 0.635011
Target:  5'- gCGGCGGgAGAcgcgggcccGCgCGGGGagCCGcCCGg -3'
miRNA:   3'- gGCCGCCgUCU---------UG-GCCCCa-GGCaGGU- -5'
5544 3' -62 NC_001806.1 + 44784 0.68 0.586626
Target:  5'- aUCGGCucGGUgAGGGCCGGGGgggUCG-CCAg -3'
miRNA:   3'- -GGCCG--CCG-UCUUGGCCCCa--GGCaGGU- -5'
5544 3' -62 NC_001806.1 + 42018 0.66 0.702454
Target:  5'- gCUGGCcGCGGggUUGGGGUCguggguCGUCaCGg -3'
miRNA:   3'- -GGCCGcCGUCuuGGCCCCAG------GCAG-GU- -5'
5544 3' -62 NC_001806.1 + 39410 0.68 0.53897
Target:  5'- -gGGCGGUGGuacaagaagguGACC-GGGUCCGUCuCAa -3'
miRNA:   3'- ggCCGCCGUC-----------UUGGcCCCAGGCAG-GU- -5'
5544 3' -62 NC_001806.1 + 38395 0.7 0.448346
Target:  5'- gCGGCGGCucuccGCCggcucgggGGGGUCCucGUCCAg -3'
miRNA:   3'- gGCCGCCGucu--UGG--------CCCCAGG--CAGGU- -5'
5544 3' -62 NC_001806.1 + 38290 0.67 0.625312
Target:  5'- gCGaGCGGCGucGAguAUCGGcuccGGUCCGUCCu -3'
miRNA:   3'- gGC-CGCCGU--CU--UGGCC----CCAGGCAGGu -5'
5544 3' -62 NC_001806.1 + 37987 0.66 0.66407
Target:  5'- uCUGGgGGCAcgccGGCgGGGGUCCGacaaaCCAu -3'
miRNA:   3'- -GGCCgCCGUc---UUGgCCCCAGGCa----GGU- -5'
5544 3' -62 NC_001806.1 + 37922 0.72 0.351761
Target:  5'- aUGGgGGC---GCCGGGGccgUCCGUCCAc -3'
miRNA:   3'- gGCCgCCGucuUGGCCCC---AGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 37763 0.68 0.53897
Target:  5'- gUCGGCGGCGGGcgccuuucgcuCCGGGG-CCGgggcgcgggggUCCGc -3'
miRNA:   3'- -GGCCGCCGUCUu----------GGCCCCaGGC-----------AGGU- -5'
5544 3' -62 NC_001806.1 + 34404 0.69 0.520263
Target:  5'- gCGGUGGCcGGGCCGGGccgggCCGggCCGg -3'
miRNA:   3'- gGCCGCCGuCUUGGCCCca---GGCa-GGU- -5'
5544 3' -62 NC_001806.1 + 34005 0.66 0.66407
Target:  5'- gCGGgGGCGuGGGCgGGGGUgcUCGUCg- -3'
miRNA:   3'- gGCCgCCGU-CUUGgCCCCA--GGCAGgu -5'
5544 3' -62 NC_001806.1 + 33811 0.7 0.457044
Target:  5'- gCCGGCGGguGGACucgCGGGGggCCGg--- -3'
miRNA:   3'- -GGCCGCCguCUUG---GCCCCa-GGCaggu -5'
5544 3' -62 NC_001806.1 + 33615 0.7 0.457044
Target:  5'- aCCGGC-GCGGGGCgGGGGgCCGgauacCCAc -3'
miRNA:   3'- -GGCCGcCGUCUUGgCCCCaGGCa----GGU- -5'
5544 3' -62 NC_001806.1 + 33104 0.69 0.501817
Target:  5'- gCCGGCGaGCGGGuccggaCGGGGcCCGgaccgCCGc -3'
miRNA:   3'- -GGCCGC-CGUCUug----GCCCCaGGCa----GGU- -5'
5544 3' -62 NC_001806.1 + 30289 0.67 0.644709
Target:  5'- cCCGG-GGCGGAGCCGG---CCGcCCGc -3'
miRNA:   3'- -GGCCgCCGUCUUGGCCccaGGCaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.