miRNA display CGI


Results 41 - 60 of 174 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 5' -55.3 NC_001806.1 + 2656 0.72 0.678717
Target:  5'- cCUCCAGGGCGgcggccgcGGGCGCCGccguguGGCUGGGc -3'
miRNA:   3'- -GGGGUCUCGUa-------UUUGUGGU------CCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 89466 0.72 0.678717
Target:  5'- cCCCCAG-GCuc--GC-CCGGGCCGGc -3'
miRNA:   3'- -GGGGUCuCGuauuUGuGGUCCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 94194 0.72 0.678717
Target:  5'- -gCCGG-GCcuggAGGC-CCAGGCCGGGg -3'
miRNA:   3'- ggGGUCuCGua--UUUGuGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 101450 0.71 0.687804
Target:  5'- aCCCAGcucccgccguuGCGUucacgccAAcCGCCGGGCCGGGa -3'
miRNA:   3'- gGGGUCu----------CGUA-------UUuGUGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 18072 0.71 0.688811
Target:  5'- gUCCCAgacGAGCAacccacauCGCCGGGCCGuGGu -3'
miRNA:   3'- -GGGGU---CUCGUauuu----GUGGUCCGGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 71670 0.71 0.688811
Target:  5'- aCCCCGGGGguccggucCAUAAAC---AGGCCGGGu -3'
miRNA:   3'- -GGGGUCUC--------GUAUUUGuggUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 83314 0.71 0.692837
Target:  5'- cCCCCGGAucccuguggggagggGCuuuUGGACACCGGGCCc-- -3'
miRNA:   3'- -GGGGUCU---------------CGu--AUUUGUGGUCCGGccc -5'
5547 5' -55.3 NC_001806.1 + 4825 0.71 0.698859
Target:  5'- gUCCGGGGCGgcgAGGcCGCgGGGUCGGGc -3'
miRNA:   3'- gGGGUCUCGUa--UUU-GUGgUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 9099 0.71 0.698859
Target:  5'- cCCCCGGAGCcaccGAGCggccaGCCAGGCgacaaacaGGGa -3'
miRNA:   3'- -GGGGUCUCGua--UUUG-----UGGUCCGg-------CCC- -5'
5547 5' -55.3 NC_001806.1 + 22180 0.71 0.708851
Target:  5'- gCCCCGGcGGCcguGUGGGCGCCcGaGCUGGGc -3'
miRNA:   3'- -GGGGUC-UCG---UAUUUGUGGuC-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 105173 0.71 0.715807
Target:  5'- gCCCCAGAGCA---ACG-CGGGCCcacgaccccauaucGGGg -3'
miRNA:   3'- -GGGGUCUCGUauuUGUgGUCCGG--------------CCC- -5'
5547 5' -55.3 NC_001806.1 + 119521 0.71 0.718778
Target:  5'- aCgCCAGGGCGcccugGuuCACCAGGCCgucagcGGGg -3'
miRNA:   3'- -GgGGUCUCGUa----UuuGUGGUCCGG------CCC- -5'
5547 5' -55.3 NC_001806.1 + 22078 0.71 0.718778
Target:  5'- cCCCCGGGGCGgguGCugUAcggcGGCCuGGGc -3'
miRNA:   3'- -GGGGUCUCGUauuUGugGU----CCGG-CCC- -5'
5547 5' -55.3 NC_001806.1 + 57662 0.71 0.725683
Target:  5'- cCCCCGGAagGCGgagaAGGCGCCGgggcuugcuucuccGGUCGGGa -3'
miRNA:   3'- -GGGGUCU--CGUa---UUUGUGGU--------------CCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 132997 0.71 0.728631
Target:  5'- cCCUCAGAGCc------CUGGGCCGGGg -3'
miRNA:   3'- -GGGGUCUCGuauuuguGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 100944 0.71 0.728631
Target:  5'- cCCCCAG-GCGUuuuGugGCCAGGgagaCCGaGGg -3'
miRNA:   3'- -GGGGUCuCGUAu--UugUGGUCC----GGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 22301 0.7 0.745187
Target:  5'- uCCCCGGGGaCGUGGcgcuGgACCAGGCCugcuuccggaucucGGGc -3'
miRNA:   3'- -GGGGUCUC-GUAUU----UgUGGUCCGG--------------CCC- -5'
5547 5' -55.3 NC_001806.1 + 2793 0.7 0.748081
Target:  5'- gCCCGGGGCGccgcGgGCUGGGCgGGGg -3'
miRNA:   3'- gGGGUCUCGUauu-UgUGGUCCGgCCC- -5'
5547 5' -55.3 NC_001806.1 + 106639 0.7 0.748081
Target:  5'- uCCCCGcGGGCc-AGACGCUagaucGGGUCGGGg -3'
miRNA:   3'- -GGGGU-CUCGuaUUUGUGG-----UCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 28134 0.7 0.748081
Target:  5'- gCCCCGGAGCgaGUAccCGCC-GGCCugaGGGc -3'
miRNA:   3'- -GGGGUCUCG--UAUuuGUGGuCCGG---CCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.