Results 41 - 60 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5548 | 5' | -61.7 | NC_001806.1 | + | 149562 | 0.69 | 0.502083 |
Target: 5'- cAGGGggUUCCg-CaCCCCCuaacauGGCGCCCc -3' miRNA: 3'- -UCCCuuGAGGgaGaGGGGG------CUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 123764 | 0.69 | 0.502083 |
Target: 5'- cGGGcgccccagcGGC-CCCUCUCUCCagGACGCCg -3' miRNA: 3'- uCCC---------UUGaGGGAGAGGGGg-CUGCGGg -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 2287 | 0.69 | 0.492904 |
Target: 5'- cGGcGGAccACUCCggCggccCCCCCGAgGCCCc -3' miRNA: 3'- -UC-CCU--UGAGGgaGa---GGGGGCUgCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 134171 | 0.68 | 0.568166 |
Target: 5'- gAGGcGcGCgcaC-CUCCUCCGACGCCCa -3' miRNA: 3'- -UCC-CuUGaggGaGAGGGGGCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 151243 | 0.68 | 0.568166 |
Target: 5'- gAGGGGucaGC-CCCgC-CCCCCGG-GCCCa -3' miRNA: 3'- -UCCCU---UGaGGGaGaGGGGGCUgCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 74009 | 0.68 | 0.568166 |
Target: 5'- cAGGGGGCUCCgCgcccaCcCCCCCuGgGCCCc -3' miRNA: 3'- -UCCCUUGAGG-Ga----GaGGGGGcUgCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 5017 | 0.68 | 0.577812 |
Target: 5'- cGGGGucgUCCCcgccCUCCUCCGucuccGCGCCCc -3' miRNA: 3'- -UCCCuugAGGGa---GAGGGGGC-----UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 84981 | 0.68 | 0.586522 |
Target: 5'- cGGGGccuuuucGCcgCCCUCgCCCa-GACGCCCu -3' miRNA: 3'- uCCCU-------UGa-GGGAGaGGGggCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 14759 | 0.68 | 0.587492 |
Target: 5'- uGGGcuCUCCCcaUCCCCCG-C-CCCa -3' miRNA: 3'- uCCCuuGAGGGagAGGGGGCuGcGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 147298 | 0.68 | 0.587492 |
Target: 5'- cAGGGGGgUCCCgggCcCaCCCUGgccGCGCCCc -3' miRNA: 3'- -UCCCUUgAGGGa--GaG-GGGGC---UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 6097 | 0.68 | 0.558562 |
Target: 5'- cGGGGGGCgggUCUCUCcggcgcacauaaaggCCCggcgcgaCCGACGCCCg -3' miRNA: 3'- -UCCCUUG---AGGGAGa--------------GGG-------GGCUGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 109045 | 0.68 | 0.558562 |
Target: 5'- gAGGGGGCUcaggCCCaacgCggCCCCGAuaaaCGCCCg -3' miRNA: 3'- -UCCCUUGA----GGGa---GagGGGGCU----GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 73528 | 0.68 | 0.558562 |
Target: 5'- uGGGGGACUUUCUggCCUCCacGCGCCUg -3' miRNA: 3'- -UCCCUUGAGGGAgaGGGGGc-UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 116424 | 0.68 | 0.549004 |
Target: 5'- cGGGGAC-CCCaUCagCCUCGuccCGCCCg -3' miRNA: 3'- uCCCUUGaGGG-AGagGGGGCu--GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 23804 | 0.68 | 0.549004 |
Target: 5'- cGGGGGC-CgCCUCUuuggcCCCCUGcGCGCCUc -3' miRNA: 3'- uCCCUUGaG-GGAGA-----GGGGGC-UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 52655 | 0.68 | 0.549004 |
Target: 5'- --cGAGCcCCCgcccCUCCCCCGAccuCGCCUa -3' miRNA: 3'- uccCUUGaGGGa---GAGGGGGCU---GCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 4722 | 0.68 | 0.549004 |
Target: 5'- cGGGGcCUCCCguUCgcggCCCCgGGCcgggGCCCg -3' miRNA: 3'- uCCCUuGAGGG--AGa---GGGGgCUG----CGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 120818 | 0.68 | 0.549004 |
Target: 5'- uGGGGuuugCCCUC-CCCCCGcC-CCCg -3' miRNA: 3'- -UCCCuugaGGGAGaGGGGGCuGcGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 65443 | 0.68 | 0.549004 |
Target: 5'- aAGGGAGCgggggaugCCgCgg-CCCCCGgguccuggggGCGCCCg -3' miRNA: 3'- -UCCCUUGa-------GG-GagaGGGGGC----------UGCGGG- -5' |
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5548 | 5' | -61.7 | NC_001806.1 | + | 30117 | 0.68 | 0.539498 |
Target: 5'- ---cGACUCCCccccggccUCUCCCCacaggccccccgCGGCGCCCa -3' miRNA: 3'- ucccUUGAGGG--------AGAGGGG------------GCUGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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