miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 8671 0.66 0.745714
Target:  5'- aGCG-GAGCaGCCacaucaGGAGCGCCccaAauccgcccgacagaaCGGCCa -3'
miRNA:   3'- -CGCuUUCG-CGGg-----CCUCGCGG---U---------------GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 29863 0.66 0.741982
Target:  5'- uCGGAcAGCGCCCcccucGGCGCCcauCgGGCCa -3'
miRNA:   3'- cGCUU-UCGCGGGcc---UCGCGGu--G-CCGG- -5'
5550 3' -60.8 NC_001806.1 + 70818 0.66 0.741982
Target:  5'- ----uAGCGCgCUGGcGGCGUCuguCGGCCu -3'
miRNA:   3'- cgcuuUCGCG-GGCC-UCGCGGu--GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 68586 0.66 0.741982
Target:  5'- cGCGgcGGC-CCUGGGGCcgguCCGCGuccGCCa -3'
miRNA:   3'- -CGCuuUCGcGGGCCUCGc---GGUGC---CGG- -5'
5550 3' -60.8 NC_001806.1 + 23940 0.66 0.741982
Target:  5'- gGCGgcGGgGCCUGGGGgggcCGCCGgagUGGUCc -3'
miRNA:   3'- -CGCuuUCgCGGGCCUC----GCGGU---GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 144632 0.66 0.741982
Target:  5'- gGCGucGGCGacauccuccCCCuaAGCGCCGgcCGGCCg -3'
miRNA:   3'- -CGCuuUCGC---------GGGccUCGCGGU--GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 72553 0.66 0.741982
Target:  5'- gGgGuAGGGgGCCCGGGGCcacacccgcCCACaGCCg -3'
miRNA:   3'- -CgC-UUUCgCGGGCCUCGc--------GGUGcCGG- -5'
5550 3' -60.8 NC_001806.1 + 1893 0.66 0.741982
Target:  5'- cGCGAAGaCcCCCGGGcCGaacaCGCGGCCc -3'
miRNA:   3'- -CGCUUUcGcGGGCCUcGCg---GUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 5496 0.66 0.741982
Target:  5'- cGgGAAGGaggaGCagCGGAG-GCCGcCGGCCc -3'
miRNA:   3'- -CgCUUUCg---CGg-GCCUCgCGGU-GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 113873 0.66 0.741982
Target:  5'- cGCGAcugccGGGUuaGCgCGGGGgGCCACGaCCc -3'
miRNA:   3'- -CGCU-----UUCG--CGgGCCUCgCGGUGCcGG- -5'
5550 3' -60.8 NC_001806.1 + 150653 0.66 0.741047
Target:  5'- gGCGGAcgcugguuggccgGGC-CCCGccGCGCUgGCGGCCg -3'
miRNA:   3'- -CGCUU-------------UCGcGGGCcuCGCGG-UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 109173 0.66 0.739174
Target:  5'- cGCGGGgcuccuccAGCGCCCGGucuGCGgcauaaaacacccaCCACaGCUc -3'
miRNA:   3'- -CGCUU--------UCGCGGGCCu--CGC--------------GGUGcCGG- -5'
5550 3' -60.8 NC_001806.1 + 113387 0.66 0.739174
Target:  5'- gGCGuuccGGGaCGCCCGGggccuggagcugggGGUgggacgccacGCCAUGGCCc -3'
miRNA:   3'- -CGCu---UUC-GCGGGCC--------------UCG----------CGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 39810 0.66 0.733534
Target:  5'- cGUGGuuGCGCCagcccccguugggggGGuGCGUCGgGGCCc -3'
miRNA:   3'- -CGCUuuCGCGGg--------------CCuCGCGGUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 91012 0.66 0.732591
Target:  5'- cGCGAcGGCGgCgGcaaGGGCGCgGCGGgCg -3'
miRNA:   3'- -CGCUuUCGCgGgC---CUCGCGgUGCCgG- -5'
5550 3' -60.8 NC_001806.1 + 66562 0.66 0.732591
Target:  5'- uCGGuuuGGgGCCgGGGGCGUCAUGuCCu -3'
miRNA:   3'- cGCUu--UCgCGGgCCUCGCGGUGCcGG- -5'
5550 3' -60.8 NC_001806.1 + 77847 0.66 0.732591
Target:  5'- gGCGAGauggGGgGCCUcgauGGA-UGCgGCGGCCg -3'
miRNA:   3'- -CGCUU----UCgCGGG----CCUcGCGgUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 74640 0.66 0.732591
Target:  5'- -aGGAAGCGCUgCGGcaGGCGCg--GGCCa -3'
miRNA:   3'- cgCUUUCGCGG-GCC--UCGCGgugCCGG- -5'
5550 3' -60.8 NC_001806.1 + 70461 0.66 0.732591
Target:  5'- uCGAGAGCGa-CGG-GCGCCGCcuguaugcgguGGUCg -3'
miRNA:   3'- cGCUUUCGCggGCCuCGCGGUG-----------CCGG- -5'
5550 3' -60.8 NC_001806.1 + 115074 0.66 0.732591
Target:  5'- gGCGGGAaacCGCCUGGGGCcgGCC-CaGCCc -3'
miRNA:   3'- -CGCUUUc--GCGGGCCUCG--CGGuGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.