Results 41 - 60 of 265 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5556 | 3' | -56.7 | NC_001806.1 | + | 5762 | 0.72 | 0.54475 |
Target: 5'- gGAACGGGCaGgGGgCGGgGCCCGGGCc -3' miRNA: 3'- -CUUGCUUGgCgUUgGCCgUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 22047 | 0.72 | 0.54475 |
Target: 5'- cGGgGAGCCGUGGcCCGGCG-CCGGGCc -3' miRNA: 3'- cUUgCUUGGCGUU-GGCCGUgGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 69685 | 0.72 | 0.54475 |
Target: 5'- uGGCGAGCCuGCGGCgGGCGCUCGuGGg -3' miRNA: 3'- cUUGCUUGG-CGUUGgCCGUGGGU-CCg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 78345 | 0.72 | 0.553687 |
Target: 5'- cGAGCGcggcGCCGC-GCUGGgaaagcugaguccCGCCCAGGCg -3' miRNA: 3'- -CUUGCu---UGGCGuUGGCC-------------GUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 113940 | 0.72 | 0.558671 |
Target: 5'- cGGACuucAACCGCAACgaCGGCcagcugcugcacaacACCCAGGCc -3' miRNA: 3'- -CUUGc--UUGGCGUUG--GCCG---------------UGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 21895 | 0.72 | 0.564668 |
Target: 5'- -cGCGGGCCGCAucgagcgccGCCGG-GCCCGcgcGGCg -3' miRNA: 3'- cuUGCUUGGCGU---------UGGCCgUGGGU---CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 34552 | 0.72 | 0.564668 |
Target: 5'- ---aGAGCCGCGAcCCGGCcGCCgGGGa -3' miRNA: 3'- cuugCUUGGCGUU-GGCCG-UGGgUCCg -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 30248 | 0.72 | 0.564668 |
Target: 5'- -uGCGAgcGCCGCcuCCGGgGCCC-GGCc -3' miRNA: 3'- cuUGCU--UGGCGuuGGCCgUGGGuCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 126132 | 0.72 | 0.574701 |
Target: 5'- cGGACGAcgGCgGCGagGCCGGCGCCgAcacgcGGCg -3' miRNA: 3'- -CUUGCU--UGgCGU--UGGCCGUGGgU-----CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 139210 | 0.72 | 0.574701 |
Target: 5'- cGGACGAGCUGCGGaggCGGCACgCGacGGCc -3' miRNA: 3'- -CUUGCUUGGCGUUg--GCCGUGgGU--CCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 103802 | 0.72 | 0.581748 |
Target: 5'- cGGGCGGcgccGCCGCGgcggcgacgggcucGCUGGguCCUAGGCu -3' miRNA: 3'- -CUUGCU----UGGCGU--------------UGGCCguGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 13252 | 0.72 | 0.583765 |
Target: 5'- -cACGAGCCGCAgguacguGCCGGCGgUCucaaacgcggGGGCg -3' miRNA: 3'- cuUGCUUGGCGU-------UGGCCGUgGG----------UCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 64944 | 0.72 | 0.584773 |
Target: 5'- uGAGgGAccACCGgcgUCGGCGCCCGGGCc -3' miRNA: 3'- -CUUgCU--UGGCguuGGCCGUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 24026 | 0.72 | 0.584773 |
Target: 5'- -uGCGGGCCG-GACaCGGcCGCCUGGGCg -3' miRNA: 3'- cuUGCUUGGCgUUG-GCC-GUGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 6060 | 0.71 | 0.59488 |
Target: 5'- --cCGAcuCCGC-GCCGGCcccgggggcggGCCCGGGCg -3' miRNA: 3'- cuuGCUu-GGCGuUGGCCG-----------UGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 89442 | 0.71 | 0.59488 |
Target: 5'- gGGugGGAUgGCAaaauuACCGGaCcCCCAGGCu -3' miRNA: 3'- -CUugCUUGgCGU-----UGGCC-GuGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 57093 | 0.71 | 0.59488 |
Target: 5'- aGAACaaGGGCCGCuccACCGGCcgccaguuugAgCCAGGCg -3' miRNA: 3'- -CUUG--CUUGGCGu--UGGCCG----------UgGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 49907 | 0.71 | 0.59488 |
Target: 5'- uGACGGAUCGUcgaacaaaAACCaGCcccGCCCAGGCg -3' miRNA: 3'- cUUGCUUGGCG--------UUGGcCG---UGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 1439 | 0.71 | 0.605013 |
Target: 5'- cGGGCGGcGCCgGCGGCagGGCcCCCGGGCc -3' miRNA: 3'- -CUUGCU-UGG-CGUUGg-CCGuGGGUCCG- -5' |
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5556 | 3' | -56.7 | NC_001806.1 | + | 90401 | 0.71 | 0.622281 |
Target: 5'- -uACGucuuucACgGCGGCCGGCaccuggaccccagcACCCAGGCc -3' miRNA: 3'- cuUGCu-----UGgCGUUGGCCG--------------UGGGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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