miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5557 5' -55.8 NC_001806.1 + 22748 0.66 0.930623
Target:  5'- cCCGCCACgC-CGAcGCCGaCGAcGACg- -3'
miRNA:   3'- -GGCGGUG-GcGCUuCGGC-GCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 33741 0.66 0.930623
Target:  5'- gCGCCGgcuCUGCGGugucggcggcGGCUGCGGcGGCUGc -3'
miRNA:   3'- gGCGGU---GGCGCU----------UCGGCGCUaUUGAC- -5'
5557 5' -55.8 NC_001806.1 + 30842 0.66 0.930623
Target:  5'- uCgGCCcCCGCGcugcuucuGGGCCGCGggGGCc- -3'
miRNA:   3'- -GgCGGuGGCGC--------UUCGGCGCuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 139087 0.66 0.930623
Target:  5'- aCGUUAUCuucCGggGCUGCGAgauGCUGa -3'
miRNA:   3'- gGCGGUGGc--GCuuCGGCGCUau-UGAC- -5'
5557 5' -55.8 NC_001806.1 + 93957 0.66 0.93011
Target:  5'- aCCGCCucgguccACCGCauacuccGGCCGCGGUAc--- -3'
miRNA:   3'- -GGCGG-------UGGCGcu-----UCGGCGCUAUugac -5'
5557 5' -55.8 NC_001806.1 + 85730 0.66 0.925391
Target:  5'- aCCGCC-CCGaacccugcggucCGGAGCCGCGcgGccACg- -3'
miRNA:   3'- -GGCGGuGGC------------GCUUCGGCGCuaU--UGac -5'
5557 5' -55.8 NC_001806.1 + 2930 0.66 0.925391
Target:  5'- gCCGCCGCCuccggGCGGccgGGCCGgGccggGACUc -3'
miRNA:   3'- -GGCGGUGG-----CGCU---UCGGCgCua--UUGAc -5'
5557 5' -55.8 NC_001806.1 + 68612 0.66 0.925391
Target:  5'- uCCGCCagugcGCCGUGGAGUgGauaGAccGCUGg -3'
miRNA:   3'- -GGCGG-----UGGCGCUUCGgCg--CUauUGAC- -5'
5557 5' -55.8 NC_001806.1 + 97940 0.66 0.925391
Target:  5'- uUGCCAUCGCGuggugcGAGCUGCaGAaucacgAGCUGa -3'
miRNA:   3'- gGCGGUGGCGC------UUCGGCG-CUa-----UUGAC- -5'
5557 5' -55.8 NC_001806.1 + 75720 0.66 0.925391
Target:  5'- -gGCCGCCGacgugGAGGCCGU----GCUGg -3'
miRNA:   3'- ggCGGUGGCg----CUUCGGCGcuauUGAC- -5'
5557 5' -55.8 NC_001806.1 + 25931 0.66 0.919922
Target:  5'- gCGCgCGCgGCGGgcgugggggcggGGCCGCGggAGCg- -3'
miRNA:   3'- gGCG-GUGgCGCU------------UCGGCGCuaUUGac -5'
5557 5' -55.8 NC_001806.1 + 101856 0.66 0.919922
Target:  5'- gCGCCGCCugGCG-GGCCccCGAUGACa- -3'
miRNA:   3'- gGCGGUGG--CGCuUCGGc-GCUAUUGac -5'
5557 5' -55.8 NC_001806.1 + 123823 0.66 0.919922
Target:  5'- cCCGCCACCGaucCGGccuCCGCGAgcgGCUu -3'
miRNA:   3'- -GGCGGUGGC---GCUuc-GGCGCUau-UGAc -5'
5557 5' -55.8 NC_001806.1 + 30190 0.66 0.919922
Target:  5'- cCCGCguCCGCG--GCCGCGucggGACc- -3'
miRNA:   3'- -GGCGguGGCGCuuCGGCGCua--UUGac -5'
5557 5' -55.8 NC_001806.1 + 41588 0.66 0.916528
Target:  5'- aCCGCCgcauuacggauaagcGCCGCGAucGCCGgGG-GugUGg -3'
miRNA:   3'- -GGCGG---------------UGGCGCUu-CGGCgCUaUugAC- -5'
5557 5' -55.8 NC_001806.1 + 76884 0.66 0.914219
Target:  5'- cCCGUCGCCGCGucgAGGCCcuGCGGa----- -3'
miRNA:   3'- -GGCGGUGGCGC---UUCGG--CGCUauugac -5'
5557 5' -55.8 NC_001806.1 + 1825 0.66 0.914219
Target:  5'- uUGCCGCCGCGGcacaGGCgcaGCGGcGGCg- -3'
miRNA:   3'- gGCGGUGGCGCU----UCGg--CGCUaUUGac -5'
5557 5' -55.8 NC_001806.1 + 73293 0.66 0.913636
Target:  5'- uCCGCCGCCcuggcccGCGAGgucGCCGCGuguucgcGGCUc -3'
miRNA:   3'- -GGCGGUGG-------CGCUU---CGGCGCua-----UUGAc -5'
5557 5' -55.8 NC_001806.1 + 3041 0.66 0.908281
Target:  5'- gCCGCCGCCGCcagcaGggGgCGCaggcuCUGg -3'
miRNA:   3'- -GGCGGUGGCG-----CuuCgGCGcuauuGAC- -5'
5557 5' -55.8 NC_001806.1 + 69258 0.66 0.908281
Target:  5'- uCCGCCGgCGCccAGCaGCGGcuGCUGg -3'
miRNA:   3'- -GGCGGUgGCGcuUCGgCGCUauUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.