miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 3' -50.8 NC_001806.1 + 147682 0.66 0.995239
Target:  5'- cCCGggGGCCgggGCgCGGgggcGGGCCccGGAGGc -3'
miRNA:   3'- aGGCuuUCGG---UG-GUUa---UCUGG--UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 102039 0.66 0.995239
Target:  5'- cUCCGcucuugauGGCCcCCGAgucGGAcCCGGAGGc -3'
miRNA:   3'- -AGGCuu------UCGGuGGUUa--UCU-GGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 9985 0.66 0.995239
Target:  5'- -aCGGAGGCCGCCugccacGCCAGccccGGGa -3'
miRNA:   3'- agGCUUUCGGUGGuuauc-UGGUC----UCC- -5'
5558 3' -50.8 NC_001806.1 + 64852 0.66 0.995239
Target:  5'- gUCCGAAAGCCccuCCGcgcGUcccGGGCCAcGGcGGg -3'
miRNA:   3'- -AGGCUUUCGGu--GGU---UA---UCUGGU-CU-CC- -5'
5558 3' -50.8 NC_001806.1 + 52928 0.66 0.995239
Target:  5'- cUCGAucGGCCACgGGUguggGGACCcgccccGGAGGg -3'
miRNA:   3'- aGGCUu-UCGGUGgUUA----UCUGG------UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 65420 0.66 0.995239
Target:  5'- cUCCGAuguuuGUCACCGcaacgaagGGAgCGGGGGa -3'
miRNA:   3'- -AGGCUuu---CGGUGGUua------UCUgGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 115851 0.66 0.995165
Target:  5'- uUCCGAGGGCCGggccccauaaaacCCAAgccgGGACUccgcGGAcGGa -3'
miRNA:   3'- -AGGCUUUCGGU-------------GGUUa---UCUGG----UCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 151261 0.66 0.994939
Target:  5'- cCCG--GGCCcacGCCGGgcggugggggccgGGGCCGGGGGg -3'
miRNA:   3'- aGGCuuUCGG---UGGUUa------------UCUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 27349 0.66 0.99446
Target:  5'- -gCGGGAGUUACCGcccaAUGGGCCGGGc- -3'
miRNA:   3'- agGCUUUCGGUGGU----UAUCUGGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 77970 0.66 0.99446
Target:  5'- cCCG-GGGCCGCCGcucGGACCccAGAGc -3'
miRNA:   3'- aGGCuUUCGGUGGUua-UCUGG--UCUCc -5'
5558 3' -50.8 NC_001806.1 + 73441 0.66 0.99446
Target:  5'- cCCGGAcGCaCACCc--AGGCCGGGGu -3'
miRNA:   3'- aGGCUUuCG-GUGGuuaUCUGGUCUCc -5'
5558 3' -50.8 NC_001806.1 + 117699 0.66 0.99446
Target:  5'- cCCGAGcccgcgucGGCCcCCuccgAGGCCAGuAGGc -3'
miRNA:   3'- aGGCUU--------UCGGuGGuua-UCUGGUC-UCC- -5'
5558 3' -50.8 NC_001806.1 + 20386 0.66 0.99446
Target:  5'- cCCGGcguCCGgCGGgcgGGACCGGGGGg -3'
miRNA:   3'- aGGCUuucGGUgGUUa--UCUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 127696 0.66 0.99446
Target:  5'- gUCGAGcuGGCCGCCGuaugAGAUCgcguAGGGGu -3'
miRNA:   3'- aGGCUU--UCGGUGGUua--UCUGG----UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 31800 0.66 0.99446
Target:  5'- cCCGAAAGCauccuGCCAcuggcAUGGAgCCAGAa- -3'
miRNA:   3'- aGGCUUUCGg----UGGU-----UAUCU-GGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 144795 0.66 0.993582
Target:  5'- -gCGAAGGCCGCguAcggcccgGGACgAGGGGc -3'
miRNA:   3'- agGCUUUCGGUGguUa------UCUGgUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 139830 0.66 0.993582
Target:  5'- gCCGGGAG-CGCCA--GGACCgccugccgcgcGGAGGc -3'
miRNA:   3'- aGGCUUUCgGUGGUuaUCUGG-----------UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 109535 0.66 0.993582
Target:  5'- cUCGGGAGCCgggggaggugcGCC--UGGGCCAGGGc -3'
miRNA:   3'- aGGCUUUCGG-----------UGGuuAUCUGGUCUCc -5'
5558 3' -50.8 NC_001806.1 + 43029 0.66 0.993582
Target:  5'- aCCGGcucGGCCcCCAGUAGAgaguuUguGAGGa -3'
miRNA:   3'- aGGCUu--UCGGuGGUUAUCU-----GguCUCC- -5'
5558 3' -50.8 NC_001806.1 + 9190 0.66 0.993582
Target:  5'- cCCGggGGUCGCgGGUGuGGCgAGGGc -3'
miRNA:   3'- aGGCuuUCGGUGgUUAU-CUGgUCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.