miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5561 3' -72.7 NC_001806.1 + 65270 0.66 0.273398
Target:  5'- aGCCGCCaCCCaGGGUgaagCggggaggaggaggggGGCCCCCa -3'
miRNA:   3'- gCGGCGG-GGGcCCCGg---Ga--------------CCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 4334 0.66 0.272822
Target:  5'- cCGCCGCgcgggCCCGGcGGCgCUcgaugcGGCCCgCGg -3'
miRNA:   3'- -GCGGCGg----GGGCC-CCGgGA------CCGGGgGC- -5'
5561 3' -72.7 NC_001806.1 + 144576 0.66 0.272822
Target:  5'- gGgCGCgUCCGGGuGCCgCggcucuccgGGCCCCCc -3'
miRNA:   3'- gCgGCGgGGGCCC-CGG-Ga--------CCGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 26635 0.66 0.272246
Target:  5'- -cCCGCCCgagCCGGcgccagaGGCCC-GGCCCaCCGn -3'
miRNA:   3'- gcGGCGGG---GGCC-------CCGGGaCCGGG-GGC- -5'
5561 3' -72.7 NC_001806.1 + 147325 0.66 0.271671
Target:  5'- gCGCC-CCCCCggcccugagucggagGGGGggugcgucgccgcccUCUUGGCCCCUGc -3'
miRNA:   3'- -GCGGcGGGGG---------------CCCC---------------GGGACCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 29805 0.66 0.267107
Target:  5'- cCGCCGCgCCCCccgugacgggcGGGGCgUCUcacgcaGCCCCCc -3'
miRNA:   3'- -GCGGCG-GGGG-----------CCCCG-GGAc-----CGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 22779 0.66 0.267107
Target:  5'- gCGCCGCgCCCaGGccGGCCgCgUGGCCgUCGa -3'
miRNA:   3'- -GCGGCGgGGG-CC--CCGG-G-ACCGGgGGC- -5'
5561 3' -72.7 NC_001806.1 + 22114 0.66 0.267107
Target:  5'- aGCCGCCC---GGGCCUcuggggGGCgCCCGa -3'
miRNA:   3'- gCGGCGGGggcCCCGGGa-----CCGgGGGC- -5'
5561 3' -72.7 NC_001806.1 + 7270 0.66 0.267107
Target:  5'- cCGCgUGuUCCCCGGGaGCCCcgGGUuccgcgaccaCCCCGa -3'
miRNA:   3'- -GCG-GC-GGGGGCCC-CGGGa-CCG----------GGGGC- -5'
5561 3' -72.7 NC_001806.1 + 22426 0.66 0.265975
Target:  5'- gGCCGCUUcggCUGGGGCCUggcgcacgcggcGGCCgCCGu -3'
miRNA:   3'- gCGGCGGG---GGCCCCGGGa-----------CCGGgGGC- -5'
5561 3' -72.7 NC_001806.1 + 89536 0.66 0.263724
Target:  5'- gCGCgGCgCCCCGGccggcGGCCCgguuuauucgcgucGGCCCggCCGg -3'
miRNA:   3'- -GCGgCG-GGGGCC-----CCGGGa-------------CCGGG--GGC- -5'
5561 3' -72.7 NC_001806.1 + 3197 0.66 0.261489
Target:  5'- uCGCUGCCgCCGGccacGCgCaGGUCCCCGc -3'
miRNA:   3'- -GCGGCGGgGGCCc---CGgGaCCGGGGGC- -5'
5561 3' -72.7 NC_001806.1 + 630 0.66 0.261489
Target:  5'- aGCCcUCCCCGGccccaGCCCUccccGGCCCCa- -3'
miRNA:   3'- gCGGcGGGGGCCc----CGGGA----CCGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 82129 0.66 0.261489
Target:  5'- aGCCGCCCCUugauGGuGUCCaGGUCgCCGa -3'
miRNA:   3'- gCGGCGGGGGc---CC-CGGGaCCGGgGGC- -5'
5561 3' -72.7 NC_001806.1 + 694 0.66 0.261489
Target:  5'- aGCCcUCCCCGGccccaGCCCUccccGGCCCCa- -3'
miRNA:   3'- gCGGcGGGGGCCc----CGGGA----CCGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 21581 0.66 0.261489
Target:  5'- uCGCCGCgCCCGccGGCCCa-GCCgCCGc -3'
miRNA:   3'- -GCGGCGgGGGCc-CCGGGacCGGgGGC- -5'
5561 3' -72.7 NC_001806.1 + 79479 0.66 0.261489
Target:  5'- cCGCgGCCCCCuGGGCCggcagucacGGCUCgCGa -3'
miRNA:   3'- -GCGgCGGGGGcCCCGGga-------CCGGGgGC- -5'
5561 3' -72.7 NC_001806.1 + 74805 0.66 0.261489
Target:  5'- uGCacaaaCUCCagGGGGUCCUGcGCCCCCu -3'
miRNA:   3'- gCGgc---GGGGg-CCCCGGGAC-CGGGGGc -5'
5561 3' -72.7 NC_001806.1 + 662 0.66 0.261489
Target:  5'- aGCCcUCCCCGGccccaGCCCUccccGGCCCCa- -3'
miRNA:   3'- gCGGcGGGGGCCc----CGGGA----CCGGGGgc -5'
5561 3' -72.7 NC_001806.1 + 54106 0.66 0.259823
Target:  5'- aGCCgaGCCcgcaugggggguguCCCGGGGCCCaggGGCCgguaggcguguUCCGa -3'
miRNA:   3'- gCGG--CGG--------------GGGCCCCGGGa--CCGG-----------GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.