Results 1 - 20 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5563 | 5' | -65.4 | NC_001806.1 | + | 35820 | 0.66 | 0.532282 |
Target: 5'- cUCGGGCg--CGUGGCGGCCuCCUa- -3' miRNA: 3'- aGGUCCGgcaGCACCGCCGGcGGGcg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 134226 | 0.66 | 0.532282 |
Target: 5'- -aUAGGCCacgcaGUCGgagcgggggGGCGGCC-CCgGCa -3' miRNA: 3'- agGUCCGG-----CAGCa--------CCGCCGGcGGgCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 2175 | 0.66 | 0.532282 |
Target: 5'- cCCAGcGCCGacaCGUcGGgGGCgccgguccaauUGCCCGCc -3' miRNA: 3'- aGGUC-CGGCa--GCA-CCgCCG-----------GCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 140666 | 0.66 | 0.532282 |
Target: 5'- aUCUggAGGCUuuuGUUGcUGcGCGG-CGCCCGCg -3' miRNA: 3'- -AGG--UCCGG---CAGC-AC-CGCCgGCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 128535 | 0.66 | 0.532282 |
Target: 5'- -gCGGGCCGcagCcaGaCGGCgGCCCGCg -3' miRNA: 3'- agGUCCGGCa--GcaCcGCCGgCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 100362 | 0.66 | 0.525832 |
Target: 5'- gCCGGGauccacagguagcucCCGUCGccgGGCGGCgcgggggccggggUGCCCGa -3' miRNA: 3'- aGGUCC---------------GGCAGCa--CCGCCG-------------GCGGGCg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 70153 | 0.66 | 0.523077 |
Target: 5'- aCC-GGCCGccCGgGGCGGCCucgGCCC-Ca -3' miRNA: 3'- aGGuCCGGCa-GCaCCGCCGG---CGGGcG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 4685 | 0.66 | 0.523077 |
Target: 5'- -aCAGGCgGUcCGUGGggucCGGauaCGCgCCGCg -3' miRNA: 3'- agGUCCGgCA-GCACC----GCCg--GCG-GGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 100094 | 0.66 | 0.523077 |
Target: 5'- cCCAGGgucucCCG-CGgccGGCuGaCCGCCCGCc -3' miRNA: 3'- aGGUCC-----GGCaGCa--CCGcC-GGCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 151320 | 0.66 | 0.523077 |
Target: 5'- cUCUGGcGCCGgcUCGggcgGGgGGCUGUCCGg -3' miRNA: 3'- -AGGUC-CGGC--AGCa---CCgCCGGCGGGCg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 3161 | 0.66 | 0.523077 |
Target: 5'- aCCAGGCUcaCGgcgcgcacGGCGGCCacggcgGCCuCGCu -3' miRNA: 3'- aGGUCCGGcaGCa-------CCGCCGG------CGG-GCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 135560 | 0.66 | 0.520327 |
Target: 5'- aUCCAccggucacggacucGGCCG-CcaGGuCGGCCGCgCGCu -3' miRNA: 3'- -AGGU--------------CCGGCaGcaCC-GCCGGCGgGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 30386 | 0.66 | 0.513934 |
Target: 5'- gCCGGGCgCGUgcgacgGUGGCGcGCgGCUCGg -3' miRNA: 3'- aGGUCCG-GCAg-----CACCGC-CGgCGGGCg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 1903 | 0.66 | 0.513934 |
Target: 5'- cCCGGGCCGaacaCGcGGCccgaGGCCaGCaCCGUg -3' miRNA: 3'- aGGUCCGGCa---GCaCCG----CCGG-CG-GGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 38492 | 0.66 | 0.513934 |
Target: 5'- aCCGGGCUGUC--GGCuGCCGUCgGg -3' miRNA: 3'- aGGUCCGGCAGcaCCGcCGGCGGgCg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 2774 | 0.66 | 0.513934 |
Target: 5'- -gCGGGCCugcGcCGcGGCGGCCcgggGCgCCGCg -3' miRNA: 3'- agGUCCGG---CaGCaCCGCCGG----CG-GGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 42778 | 0.66 | 0.513934 |
Target: 5'- gCCAGGgCGUCcUGuagcGCGGCgacguCGUCCGCu -3' miRNA: 3'- aGGUCCgGCAGcAC----CGCCG-----GCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 135972 | 0.66 | 0.513934 |
Target: 5'- aCgAGGCg--CGaGGCGGCCGaCCCGg -3' miRNA: 3'- aGgUCCGgcaGCaCCGCCGGC-GGGCg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 79875 | 0.66 | 0.513934 |
Target: 5'- cCCAGGCCGcCGgccaGGCUucuCCCGCu -3' miRNA: 3'- aGGUCCGGCaGCaccgCCGGc--GGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 65662 | 0.66 | 0.513934 |
Target: 5'- cCCuggguGGCUG-CGcUGG-GGCCGCCgGCc -3' miRNA: 3'- aGGu----CCGGCaGC-ACCgCCGGCGGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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