miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5563 5' -65.4 NC_001806.1 + 35820 0.66 0.532282
Target:  5'- cUCGGGCg--CGUGGCGGCCuCCUa- -3'
miRNA:   3'- aGGUCCGgcaGCACCGCCGGcGGGcg -5'
5563 5' -65.4 NC_001806.1 + 134226 0.66 0.532282
Target:  5'- -aUAGGCCacgcaGUCGgagcgggggGGCGGCC-CCgGCa -3'
miRNA:   3'- agGUCCGG-----CAGCa--------CCGCCGGcGGgCG- -5'
5563 5' -65.4 NC_001806.1 + 2175 0.66 0.532282
Target:  5'- cCCAGcGCCGacaCGUcGGgGGCgccgguccaauUGCCCGCc -3'
miRNA:   3'- aGGUC-CGGCa--GCA-CCgCCG-----------GCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 140666 0.66 0.532282
Target:  5'- aUCUggAGGCUuuuGUUGcUGcGCGG-CGCCCGCg -3'
miRNA:   3'- -AGG--UCCGG---CAGC-AC-CGCCgGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 128535 0.66 0.532282
Target:  5'- -gCGGGCCGcagCcaGaCGGCgGCCCGCg -3'
miRNA:   3'- agGUCCGGCa--GcaCcGCCGgCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 100362 0.66 0.525832
Target:  5'- gCCGGGauccacagguagcucCCGUCGccgGGCGGCgcgggggccggggUGCCCGa -3'
miRNA:   3'- aGGUCC---------------GGCAGCa--CCGCCG-------------GCGGGCg -5'
5563 5' -65.4 NC_001806.1 + 70153 0.66 0.523077
Target:  5'- aCC-GGCCGccCGgGGCGGCCucgGCCC-Ca -3'
miRNA:   3'- aGGuCCGGCa-GCaCCGCCGG---CGGGcG- -5'
5563 5' -65.4 NC_001806.1 + 4685 0.66 0.523077
Target:  5'- -aCAGGCgGUcCGUGGggucCGGauaCGCgCCGCg -3'
miRNA:   3'- agGUCCGgCA-GCACC----GCCg--GCG-GGCG- -5'
5563 5' -65.4 NC_001806.1 + 100094 0.66 0.523077
Target:  5'- cCCAGGgucucCCG-CGgccGGCuGaCCGCCCGCc -3'
miRNA:   3'- aGGUCC-----GGCaGCa--CCGcC-GGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 151320 0.66 0.523077
Target:  5'- cUCUGGcGCCGgcUCGggcgGGgGGCUGUCCGg -3'
miRNA:   3'- -AGGUC-CGGC--AGCa---CCgCCGGCGGGCg -5'
5563 5' -65.4 NC_001806.1 + 3161 0.66 0.523077
Target:  5'- aCCAGGCUcaCGgcgcgcacGGCGGCCacggcgGCCuCGCu -3'
miRNA:   3'- aGGUCCGGcaGCa-------CCGCCGG------CGG-GCG- -5'
5563 5' -65.4 NC_001806.1 + 135560 0.66 0.520327
Target:  5'- aUCCAccggucacggacucGGCCG-CcaGGuCGGCCGCgCGCu -3'
miRNA:   3'- -AGGU--------------CCGGCaGcaCC-GCCGGCGgGCG- -5'
5563 5' -65.4 NC_001806.1 + 30386 0.66 0.513934
Target:  5'- gCCGGGCgCGUgcgacgGUGGCGcGCgGCUCGg -3'
miRNA:   3'- aGGUCCG-GCAg-----CACCGC-CGgCGGGCg -5'
5563 5' -65.4 NC_001806.1 + 1903 0.66 0.513934
Target:  5'- cCCGGGCCGaacaCGcGGCccgaGGCCaGCaCCGUg -3'
miRNA:   3'- aGGUCCGGCa---GCaCCG----CCGG-CG-GGCG- -5'
5563 5' -65.4 NC_001806.1 + 38492 0.66 0.513934
Target:  5'- aCCGGGCUGUC--GGCuGCCGUCgGg -3'
miRNA:   3'- aGGUCCGGCAGcaCCGcCGGCGGgCg -5'
5563 5' -65.4 NC_001806.1 + 2774 0.66 0.513934
Target:  5'- -gCGGGCCugcGcCGcGGCGGCCcgggGCgCCGCg -3'
miRNA:   3'- agGUCCGG---CaGCaCCGCCGG----CG-GGCG- -5'
5563 5' -65.4 NC_001806.1 + 42778 0.66 0.513934
Target:  5'- gCCAGGgCGUCcUGuagcGCGGCgacguCGUCCGCu -3'
miRNA:   3'- aGGUCCgGCAGcAC----CGCCG-----GCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 135972 0.66 0.513934
Target:  5'- aCgAGGCg--CGaGGCGGCCGaCCCGg -3'
miRNA:   3'- aGgUCCGgcaGCaCCGCCGGC-GGGCg -5'
5563 5' -65.4 NC_001806.1 + 79875 0.66 0.513934
Target:  5'- cCCAGGCCGcCGgccaGGCUucuCCCGCu -3'
miRNA:   3'- aGGUCCGGCaGCaccgCCGGc--GGGCG- -5'
5563 5' -65.4 NC_001806.1 + 65662 0.66 0.513934
Target:  5'- cCCuggguGGCUG-CGcUGG-GGCCGCCgGCc -3'
miRNA:   3'- aGGu----CCGGCaGC-ACCgCCGGCGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.