miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 3' -60.9 NC_001806.1 + 65641 0.73 0.312449
Target:  5'- aGAGGGGCCCCGgcggccucccccuggGugGCugcgcugGGGCCGCc -3'
miRNA:   3'- gCUCCUCGGGGCa--------------CugCG-------UCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 65301 0.67 0.654935
Target:  5'- aGGGGGGCCCCcaagggccucgguGggGACGUcGGCCGUc -3'
miRNA:   3'- gCUCCUCGGGG-------------Ca-CUGCGuCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 63453 0.66 0.71443
Target:  5'- aCGaAGGGGCuCCCG-GuCGU-GGCCGCAc -3'
miRNA:   3'- -GC-UCCUCG-GGGCaCuGCGuCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 59890 0.7 0.4822
Target:  5'- aCGAGGAGgCCaGUGACGUGGA-CGCc -3'
miRNA:   3'- -GCUCCUCgGGgCACUGCGUCUgGCGu -5'
5567 3' -60.9 NC_001806.1 + 51695 0.71 0.428953
Target:  5'- cCGAGGA-CCCCGUGG-GC-GACUGCGa -3'
miRNA:   3'- -GCUCCUcGGGGCACUgCGuCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 51390 0.67 0.636193
Target:  5'- gGAGGGGCUCCuuaGCGCGG-CCGUg -3'
miRNA:   3'- gCUCCUCGGGGcacUGCGUCuGGCGu -5'
5567 3' -60.9 NC_001806.1 + 46061 0.66 0.675577
Target:  5'- gGAGGucCCCCG-GACGCGGcgucCCGUu -3'
miRNA:   3'- gCUCCucGGGGCaCUGCGUCu---GGCGu -5'
5567 3' -60.9 NC_001806.1 + 41388 0.68 0.566437
Target:  5'- --cGGGGCCCUG-GGCGCGGaugcgauccgugaGCCGCc -3'
miRNA:   3'- gcuCCUCGGGGCaCUGCGUC-------------UGGCGu -5'
5567 3' -60.9 NC_001806.1 + 37350 0.66 0.71443
Target:  5'- cCGAuaauGGGGUCCUGggGGCGCAG-CgGCAg -3'
miRNA:   3'- -GCU----CCUCGGGGCa-CUGCGUCuGgCGU- -5'
5567 3' -60.9 NC_001806.1 + 32986 0.73 0.341025
Target:  5'- --cGGGGCCCCG-GGC-CGGGCCGCc -3'
miRNA:   3'- gcuCCUCGGGGCaCUGcGUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 30290 0.66 0.71539
Target:  5'- cCGGGGcggagccggccgcccGCCCCGcgGACGCGcGCCGUg -3'
miRNA:   3'- -GCUCCu--------------CGGGGCa-CUGCGUcUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 27691 0.71 0.395442
Target:  5'- gCGGGaAGCCCCGgggcaccGACGCAGGCCa-- -3'
miRNA:   3'- -GCUCcUCGGGGCa------CUGCGUCUGGcgu -5'
5567 3' -60.9 NC_001806.1 + 24694 0.79 0.139663
Target:  5'- --cGGcccGGCCCgGUGGCGCGGGCCGCGg -3'
miRNA:   3'- gcuCC---UCGGGgCACUGCGUCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 23458 0.67 0.636193
Target:  5'- cCGcGGcGCCCCGggccgccgcGGCGCAGGCCcGCc -3'
miRNA:   3'- -GCuCCuCGGGGCa--------CUGCGUCUGG-CGu -5'
5567 3' -60.9 NC_001806.1 + 23107 0.67 0.626321
Target:  5'- cCGGGGcccugGGCCCCGcgcUGcCGCGGGacCCGCGc -3'
miRNA:   3'- -GCUCC-----UCGGGGC---ACuGCGUCU--GGCGU- -5'
5567 3' -60.9 NC_001806.1 + 22576 0.79 0.125442
Target:  5'- gCGGGGAGCCCCGgcgccGGCGCAGaugacgagggggucGCCGCc -3'
miRNA:   3'- -GCUCCUCGGGGCa----CUGCGUC--------------UGGCGu -5'
5567 3' -60.9 NC_001806.1 + 22129 0.66 0.71443
Target:  5'- uGGGGGGCgCCCGaGGCGgAGGaggCGCGa -3'
miRNA:   3'- gCUCCUCG-GGGCaCUGCgUCUg--GCGU- -5'
5567 3' -60.9 NC_001806.1 + 21875 0.76 0.206344
Target:  5'- gCGAGGAcCCCCGcGGCcuccGCGGGCCGCAu -3'
miRNA:   3'- -GCUCCUcGGGGCaCUG----CGUCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 21532 0.66 0.698985
Target:  5'- aCGGGaGGCCCCGcuacgcGGCGCguauccggaccccacGGACCGCc -3'
miRNA:   3'- -GCUCcUCGGGGCa-----CUGCG---------------UCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 21196 0.69 0.528896
Target:  5'- gCGGGGGGCCCuCGgguggGGCGCGGAgaCGgAg -3'
miRNA:   3'- -GCUCCUCGGG-GCa----CUGCGUCUg-GCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.