miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 5' -58.5 NC_001806.1 + 116004 0.66 0.80418
Target:  5'- gGUCGCCcgucUCUGC-UACGCCGcuGACCCc -3'
miRNA:   3'- -CAGCGGu---GGACGuGUGUGGU--CUGGGu -5'
5567 5' -58.5 NC_001806.1 + 20159 0.66 0.80418
Target:  5'- -cCGCCcCCcGC-CGC-CCGGGCCCGc -3'
miRNA:   3'- caGCGGuGGaCGuGUGuGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 29257 0.66 0.80418
Target:  5'- -gCGCCccACCUGCGCugcgACACCuu-CCCGu -3'
miRNA:   3'- caGCGG--UGGACGUG----UGUGGucuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 3200 0.66 0.80418
Target:  5'- -cUGCCGCCgGC-CACGCgCAGGuCCCc -3'
miRNA:   3'- caGCGGUGGaCGuGUGUG-GUCU-GGGu -5'
5567 5' -58.5 NC_001806.1 + 86171 0.66 0.80418
Target:  5'- -aCGggACCUGCGCGCGgCGGGCCa- -3'
miRNA:   3'- caGCggUGGACGUGUGUgGUCUGGgu -5'
5567 5' -58.5 NC_001806.1 + 65837 0.66 0.795289
Target:  5'- -cCGCUGCCUGacgaauCGCACCgAGAgCCAa -3'
miRNA:   3'- caGCGGUGGACgu----GUGUGG-UCUgGGU- -5'
5567 5' -58.5 NC_001806.1 + 1877 0.66 0.795289
Target:  5'- -gCGCgGCCUcCACGCGCgcgaAGACCCc -3'
miRNA:   3'- caGCGgUGGAcGUGUGUGg---UCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 21578 0.66 0.795289
Target:  5'- -cUGUCGCC-GCGCcCGCCGG-CCCAg -3'
miRNA:   3'- caGCGGUGGaCGUGuGUGGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 90418 0.66 0.795289
Target:  5'- -cCGgCACCUGgaccccaGCAC-CCAGGCCCc -3'
miRNA:   3'- caGCgGUGGACg------UGUGuGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 150862 0.66 0.795289
Target:  5'- uUCGCCggGCCgGCuccGCGgGCCAgGGCCCGg -3'
miRNA:   3'- cAGCGG--UGGaCG---UGUgUGGU-CUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 137352 0.66 0.795289
Target:  5'- -gCGCCAC--GCGCAUugCGG-CCCAa -3'
miRNA:   3'- caGCGGUGgaCGUGUGugGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 97351 0.66 0.786253
Target:  5'- -gCGCgACCU-CAC-CACCAaGGCCCGg -3'
miRNA:   3'- caGCGgUGGAcGUGuGUGGU-CUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 57001 0.66 0.786253
Target:  5'- -gCGCCGCauagGCgGCGC-CCAGugCCAg -3'
miRNA:   3'- caGCGGUGga--CG-UGUGuGGUCugGGU- -5'
5567 5' -58.5 NC_001806.1 + 125819 0.66 0.786253
Target:  5'- gGUCGgCACCUaugGCGCcugacGCGCCgcGGGCCCc -3'
miRNA:   3'- -CAGCgGUGGA---CGUG-----UGUGG--UCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 115615 0.66 0.777081
Target:  5'- -cCGCuCACCUGCGC-CAgC-GACCCc -3'
miRNA:   3'- caGCG-GUGGACGUGuGUgGuCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 104994 0.66 0.777081
Target:  5'- aUCGaCCGCCUgGCcaaACGCCAGcGCCCc -3'
miRNA:   3'- cAGC-GGUGGA-CGug-UGUGGUC-UGGGu -5'
5567 5' -58.5 NC_001806.1 + 27284 0.66 0.777081
Target:  5'- --gGCCGCCaGCGCG-GCgGGGCCCGg -3'
miRNA:   3'- cagCGGUGGaCGUGUgUGgUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 112243 0.66 0.777081
Target:  5'- --gGCCGCCUG-GC-CACCAGggugGCCCGg -3'
miRNA:   3'- cagCGGUGGACgUGuGUGGUC----UGGGU- -5'
5567 5' -58.5 NC_001806.1 + 2931 0.66 0.777081
Target:  5'- -cCGCCGCCUcCGgGCGgCCGGGCCgGg -3'
miRNA:   3'- caGCGGUGGAcGUgUGU-GGUCUGGgU- -5'
5567 5' -58.5 NC_001806.1 + 33722 0.66 0.777081
Target:  5'- -cUGCCGCUugugagUGCGCGCGCCGG-CUCu -3'
miRNA:   3'- caGCGGUGG------ACGUGUGUGGUCuGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.