miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5569 3' -66.8 NC_001806.1 + 107365 0.66 0.465779
Target:  5'- gGCUGGCGucCCCUCGGcGGUGCa-- -3'
miRNA:   3'- gUGGCCGCcuGGGGGCCuCCGCGgac -5'
5569 3' -66.8 NC_001806.1 + 6129 0.66 0.465779
Target:  5'- -cCCGGCGcGACCgacgCCCGcaGAcGGCGCCg- -3'
miRNA:   3'- guGGCCGC-CUGG----GGGC--CU-CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 122338 0.66 0.465779
Target:  5'- gCGCCGGgGGACgagaaaCaCGGuGGCGCgCUGg -3'
miRNA:   3'- -GUGGCCgCCUGgg----G-GCCuCCGCG-GAC- -5'
5569 3' -66.8 NC_001806.1 + 150258 0.66 0.465779
Target:  5'- cCugCGuCGGugCCCCGGGGcuuccCGCCUu -3'
miRNA:   3'- -GugGCcGCCugGGGGCCUCc----GCGGAc -5'
5569 3' -66.8 NC_001806.1 + 127199 0.66 0.465779
Target:  5'- gCGCgGgguuacGCGGGCCCCgGGGagacaGCGCCUGc -3'
miRNA:   3'- -GUGgC------CGCCUGGGGgCCUc----CGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 138732 0.66 0.459741
Target:  5'- --aCGGCGGagauucugucucugcGCCCCaaaucuuCGGGGGUGCCg- -3'
miRNA:   3'- gugGCCGCC---------------UGGGG-------GCCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 127749 0.66 0.457165
Target:  5'- -cCCgGGCGGGCUgCCGGGuGcGgGCCUGu -3'
miRNA:   3'- guGG-CCGCCUGGgGGCCU-C-CgCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 17158 0.66 0.457165
Target:  5'- uGCCGGUcgcuccaaGGGCCCCCccgGGAaGGCggGUCUGu -3'
miRNA:   3'- gUGGCCG--------CCUGGGGG---CCU-CCG--CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 57050 0.66 0.457165
Target:  5'- gGCCGG-GG-CCCCCGGcuGcGUGCCg- -3'
miRNA:   3'- gUGGCCgCCuGGGGGCCu-C-CGCGGac -5'
5569 3' -66.8 NC_001806.1 + 61444 0.66 0.456309
Target:  5'- gCGCCGcCGGGCUcaggauauggcugUCCGucGGCGCCUGg -3'
miRNA:   3'- -GUGGCcGCCUGG-------------GGGCcuCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 28150 0.66 0.452038
Target:  5'- cCGCCGGCcugaGGGCCgCCCccagcgcgaggugagGGgccGGGCGCCa- -3'
miRNA:   3'- -GUGGCCG----CCUGG-GGG---------------CC---UCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 96455 0.66 0.448638
Target:  5'- -gUCGGCGGcuccgaguuCCCCCGGca-CGCCUGg -3'
miRNA:   3'- guGGCCGCCu--------GGGGGCCuccGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 58978 0.66 0.440198
Target:  5'- gCGCCcuGCaGGACCaCCUGGcaGGGCGCCc- -3'
miRNA:   3'- -GUGGc-CG-CCUGG-GGGCC--UCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 121290 0.66 0.440198
Target:  5'- aUACgGGCGGccaccCCCCCGGAGGaaaCCc- -3'
miRNA:   3'- -GUGgCCGCCu----GGGGGCCUCCgc-GGac -5'
5569 3' -66.8 NC_001806.1 + 30299 0.66 0.440198
Target:  5'- aGCCGGCcGcccGCCCCgCGGAcGcGCGCCg- -3'
miRNA:   3'- gUGGCCGcC---UGGGG-GCCU-C-CGCGGac -5'
5569 3' -66.8 NC_001806.1 + 121826 0.66 0.440198
Target:  5'- uGCgGcGCGGAcaacauCCCCCcgaccagcgccgGGuGGCGCCUGu -3'
miRNA:   3'- gUGgC-CGCCU------GGGGG------------CCuCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 20393 0.66 0.43185
Target:  5'- -uCCGGCGGGCgggaCCgGGGGGC-CCg- -3'
miRNA:   3'- guGGCCGCCUGg---GGgCCUCCGcGGac -5'
5569 3' -66.8 NC_001806.1 + 100064 0.66 0.43185
Target:  5'- gUACCGGCGacgcuuucccGACCCCCGGAccccaGG-GUCUc -3'
miRNA:   3'- -GUGGCCGC----------CUGGGGGCCU-----CCgCGGAc -5'
5569 3' -66.8 NC_001806.1 + 13599 0.66 0.43185
Target:  5'- gGCUGGgGGGCUggaacgggUCCGGuAGGCccGCCUGg -3'
miRNA:   3'- gUGGCCgCCUGG--------GGGCC-UCCG--CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 77959 0.66 0.43185
Target:  5'- gACgCGGCGG--CCCCGGGGcCGCCg- -3'
miRNA:   3'- gUG-GCCGCCugGGGGCCUCcGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.