miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5572 3' -62.6 NC_001806.1 + 96421 0.66 0.601475
Target:  5'- cGCUCUUGGGGUugaCGCugGGGGuCCUGGUg- -3'
miRNA:   3'- -CGAGAGCCCCG---GCG--UCCU-GGGUCGuu -5'
5572 3' -62.6 NC_001806.1 + 30791 0.66 0.601475
Target:  5'- cCUCgggCGGGGCCGUcGGuGCCCuGgGAg -3'
miRNA:   3'- cGAGa--GCCCCGGCGuCC-UGGGuCgUU- -5'
5572 3' -62.6 NC_001806.1 + 51779 0.66 0.601475
Target:  5'- cGUUCaagagCGGGGCCGUGGcGGCCaAGUAc -3'
miRNA:   3'- -CGAGa----GCCCCGGCGUC-CUGGgUCGUu -5'
5572 3' -62.6 NC_001806.1 + 148172 0.66 0.600486
Target:  5'- cGC-CUCugcguggGGGGgCGCGGGGCguCCGGCGGg -3'
miRNA:   3'- -CGaGAG-------CCCCgGCGUCCUG--GGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 92125 0.66 0.595543
Target:  5'- aGCuUCUCGGGcggcgauccaaccucGCCGUguaccAGGACCUGGCc- -3'
miRNA:   3'- -CG-AGAGCCC---------------CGGCG-----UCCUGGGUCGuu -5'
5572 3' -62.6 NC_001806.1 + 67201 0.66 0.59258
Target:  5'- cGCUCggucugccggccuggCGGGGCgCGCugguGGGCCaggugaGGCAGg -3'
miRNA:   3'- -CGAGa--------------GCCCCG-GCGu---CCUGGg-----UCGUU- -5'
5572 3' -62.6 NC_001806.1 + 146823 0.66 0.591593
Target:  5'- cGgUCUCGGGGa-GCAGGGUgCGGCGg -3'
miRNA:   3'- -CgAGAGCCCCggCGUCCUGgGUCGUu -5'
5572 3' -62.6 NC_001806.1 + 5083 0.66 0.58174
Target:  5'- gGCUCggggugggCGGcGGCCcgucgGUGGGGCCCGGgGAg -3'
miRNA:   3'- -CGAGa-------GCC-CCGG-----CGUCCUGGGUCgUU- -5'
5572 3' -62.6 NC_001806.1 + 59615 0.66 0.58174
Target:  5'- aGCgC-CGGGGCCuuGGGGcCCCGGCc- -3'
miRNA:   3'- -CGaGaGCCCCGGcgUCCU-GGGUCGuu -5'
5572 3' -62.6 NC_001806.1 + 4354 0.66 0.580757
Target:  5'- cGCUCgaugcggcccgCGGaGGCCGCGGGgguccucgccgccGCCCGGgGc -3'
miRNA:   3'- -CGAGa----------GCC-CCGGCGUCC-------------UGGGUCgUu -5'
5572 3' -62.6 NC_001806.1 + 146167 0.66 0.580757
Target:  5'- uGCUUUCGGGGaUCGguGGucaggcaGCCCGGg-- -3'
miRNA:   3'- -CGAGAGCCCC-GGCguCC-------UGGGUCguu -5'
5572 3' -62.6 NC_001806.1 + 150873 0.66 0.571921
Target:  5'- gGCUC-CGcGGGCC--AGGGCCCGGgCAc -3'
miRNA:   3'- -CGAGaGC-CCCGGcgUCCUGGGUC-GUu -5'
5572 3' -62.6 NC_001806.1 + 43699 0.66 0.571921
Target:  5'- cGCcUUCGGGGuuGCcggGGGAaCCCGGUc- -3'
miRNA:   3'- -CGaGAGCCCCggCG---UCCU-GGGUCGuu -5'
5572 3' -62.6 NC_001806.1 + 2902 0.66 0.571921
Target:  5'- cGCUCUUcuucgucuucgGGGGUCGCGGGccgccGCCUccgGGCGg -3'
miRNA:   3'- -CGAGAG-----------CCCCGGCGUCC-----UGGG---UCGUu -5'
5572 3' -62.6 NC_001806.1 + 43287 0.66 0.562141
Target:  5'- cGCcCUCGGaggcggagccgcGGCUGCAGGAggcCCUGGCGGu -3'
miRNA:   3'- -CGaGAGCC------------CCGGCGUCCU---GGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 130838 0.66 0.562141
Target:  5'- gGgaCUCGGcGGCCGgGGGAUCUGGgAGg -3'
miRNA:   3'- -CgaGAGCC-CCGGCgUCCUGGGUCgUU- -5'
5572 3' -62.6 NC_001806.1 + 37782 0.66 0.552408
Target:  5'- cGCUC-CGGGGCCggggcGCGGGGgUCcGCGGg -3'
miRNA:   3'- -CGAGaGCCCCGG-----CGUCCUgGGuCGUU- -5'
5572 3' -62.6 NC_001806.1 + 4177 0.66 0.552408
Target:  5'- cGCcC-CGGGGgCG-GGGGCCCGGCGc -3'
miRNA:   3'- -CGaGaGCCCCgGCgUCCUGGGUCGUu -5'
5572 3' -62.6 NC_001806.1 + 140284 0.66 0.552408
Target:  5'- aCUUUUGGGGUCcUAGGAuCCCGGCc- -3'
miRNA:   3'- cGAGAGCCCCGGcGUCCU-GGGUCGuu -5'
5572 3' -62.6 NC_001806.1 + 119612 0.67 0.542726
Target:  5'- gGCg---GGGGCCGCuuuguGGcCCCAGCGc -3'
miRNA:   3'- -CGagagCCCCGGCGu----CCuGGGUCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.