Results 1 - 20 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 51779 | 0.66 | 0.601475 |
Target: 5'- cGUUCaagagCGGGGCCGUGGcGGCCaAGUAc -3' miRNA: 3'- -CGAGa----GCCCCGGCGUC-CUGGgUCGUu -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 96421 | 0.66 | 0.601475 |
Target: 5'- cGCUCUUGGGGUugaCGCugGGGGuCCUGGUg- -3' miRNA: 3'- -CGAGAGCCCCG---GCG--UCCU-GGGUCGuu -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 30791 | 0.66 | 0.601475 |
Target: 5'- cCUCgggCGGGGCCGUcGGuGCCCuGgGAg -3' miRNA: 3'- cGAGa--GCCCCGGCGuCC-UGGGuCgUU- -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 148172 | 0.66 | 0.600486 |
Target: 5'- cGC-CUCugcguggGGGGgCGCGGGGCguCCGGCGGg -3' miRNA: 3'- -CGaGAG-------CCCCgGCGUCCUG--GGUCGUU- -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 92125 | 0.66 | 0.595543 |
Target: 5'- aGCuUCUCGGGcggcgauccaaccucGCCGUguaccAGGACCUGGCc- -3' miRNA: 3'- -CG-AGAGCCC---------------CGGCG-----UCCUGGGUCGuu -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 67201 | 0.66 | 0.59258 |
Target: 5'- cGCUCggucugccggccuggCGGGGCgCGCugguGGGCCaggugaGGCAGg -3' miRNA: 3'- -CGAGa--------------GCCCCG-GCGu---CCUGGg-----UCGUU- -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 146823 | 0.66 | 0.591593 |
Target: 5'- cGgUCUCGGGGa-GCAGGGUgCGGCGg -3' miRNA: 3'- -CgAGAGCCCCggCGUCCUGgGUCGUu -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 5083 | 0.66 | 0.58174 |
Target: 5'- gGCUCggggugggCGGcGGCCcgucgGUGGGGCCCGGgGAg -3' miRNA: 3'- -CGAGa-------GCC-CCGG-----CGUCCUGGGUCgUU- -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 59615 | 0.66 | 0.58174 |
Target: 5'- aGCgC-CGGGGCCuuGGGGcCCCGGCc- -3' miRNA: 3'- -CGaGaGCCCCGGcgUCCU-GGGUCGuu -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 146167 | 0.66 | 0.580757 |
Target: 5'- uGCUUUCGGGGaUCGguGGucaggcaGCCCGGg-- -3' miRNA: 3'- -CGAGAGCCCC-GGCguCC-------UGGGUCguu -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 4354 | 0.66 | 0.580757 |
Target: 5'- cGCUCgaugcggcccgCGGaGGCCGCGGGgguccucgccgccGCCCGGgGc -3' miRNA: 3'- -CGAGa----------GCC-CCGGCGUCC-------------UGGGUCgUu -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 2902 | 0.66 | 0.571921 |
Target: 5'- cGCUCUUcuucgucuucgGGGGUCGCGGGccgccGCCUccgGGCGg -3' miRNA: 3'- -CGAGAG-----------CCCCGGCGUCC-----UGGG---UCGUu -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 150873 | 0.66 | 0.571921 |
Target: 5'- gGCUC-CGcGGGCC--AGGGCCCGGgCAc -3' miRNA: 3'- -CGAGaGC-CCCGGcgUCCUGGGUC-GUu -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 43699 | 0.66 | 0.571921 |
Target: 5'- cGCcUUCGGGGuuGCcggGGGAaCCCGGUc- -3' miRNA: 3'- -CGaGAGCCCCggCG---UCCU-GGGUCGuu -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 43287 | 0.66 | 0.562141 |
Target: 5'- cGCcCUCGGaggcggagccgcGGCUGCAGGAggcCCUGGCGGu -3' miRNA: 3'- -CGaGAGCC------------CCGGCGUCCU---GGGUCGUU- -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 130838 | 0.66 | 0.562141 |
Target: 5'- gGgaCUCGGcGGCCGgGGGAUCUGGgAGg -3' miRNA: 3'- -CgaGAGCC-CCGGCgUCCUGGGUCgUU- -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 37782 | 0.66 | 0.552408 |
Target: 5'- cGCUC-CGGGGCCggggcGCGGGGgUCcGCGGg -3' miRNA: 3'- -CGAGaGCCCCGG-----CGUCCUgGGuCGUU- -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 4177 | 0.66 | 0.552408 |
Target: 5'- cGCcC-CGGGGgCG-GGGGCCCGGCGc -3' miRNA: 3'- -CGaGaGCCCCgGCgUCCUGGGUCGUu -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 140284 | 0.66 | 0.552408 |
Target: 5'- aCUUUUGGGGUCcUAGGAuCCCGGCc- -3' miRNA: 3'- cGAGAGCCCCGGcGUCCU-GGGUCGuu -5' |
|||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 119612 | 0.67 | 0.542726 |
Target: 5'- gGCg---GGGGCCGCuuuguGGcCCCAGCGc -3' miRNA: 3'- -CGagagCCCCGGCGu----CCuGGGUCGUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home