miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5573 5' -55.5 NC_001806.1 + 34773 0.66 0.933338
Target:  5'- cGGCgggGCGgUUCGGGgGggGGGGGGg -3'
miRNA:   3'- uCCGgg-UGCgGAGCCCgCuuUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 65304 0.66 0.933338
Target:  5'- gGGGCCCccaaGgGCCUCGGuGgGGAcGucGGc -3'
miRNA:   3'- -UCCGGG----UgCGGAGCC-CgCUUuUuuCC- -5'
5573 5' -55.5 NC_001806.1 + 101915 0.66 0.933338
Target:  5'- -cGCCC-CGCCU-GGGCGucAAGAcacAGGg -3'
miRNA:   3'- ucCGGGuGCGGAgCCCGCu-UUUU---UCC- -5'
5573 5' -55.5 NC_001806.1 + 135064 0.66 0.932834
Target:  5'- cGGCCCcgcggggACGCgC-CGGGcCGGAAAucGGc -3'
miRNA:   3'- uCCGGG-------UGCG-GaGCCC-GCUUUUuuCC- -5'
5573 5' -55.5 NC_001806.1 + 57962 0.66 0.931311
Target:  5'- aAGGCCCcCGCCUcucccgccCGGGCagcgccaucGAGGu -3'
miRNA:   3'- -UCCGGGuGCGGA--------GCCCGcuuuu----UUCC- -5'
5573 5' -55.5 NC_001806.1 + 68574 0.66 0.928199
Target:  5'- cGGCCUGCGCaC-CGcGGCGGcccuGGGg -3'
miRNA:   3'- uCCGGGUGCG-GaGC-CCGCUuuuuUCC- -5'
5573 5' -55.5 NC_001806.1 + 150719 0.66 0.928199
Target:  5'- cGGCCCGC-CCUgugaGGGCGGGcu--GGc -3'
miRNA:   3'- uCCGGGUGcGGAg---CCCGCUUuuuuCC- -5'
5573 5' -55.5 NC_001806.1 + 121411 0.66 0.928199
Target:  5'- cGGGCgcgugCUGCGCCUUGGGCcc--GGGGGc -3'
miRNA:   3'- -UCCG-----GGUGCGGAGCCCGcuuuUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 47604 0.66 0.922821
Target:  5'- --uUCCACGCCgagcuaCGGGCGc-GGGAGGa -3'
miRNA:   3'- uccGGGUGCGGa-----GCCCGCuuUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 9788 0.66 0.922821
Target:  5'- gGGGCCCcgACGUg-CGGGUGGGu--GGGc -3'
miRNA:   3'- -UCCGGG--UGCGgaGCCCGCUUuuuUCC- -5'
5573 5' -55.5 NC_001806.1 + 49650 0.66 0.922821
Target:  5'- cGGGCCCGgaGCUcCGGGCGGc------ -3'
miRNA:   3'- -UCCGGGUg-CGGaGCCCGCUuuuuucc -5'
5573 5' -55.5 NC_001806.1 + 73735 0.66 0.922821
Target:  5'- cGGCCaaucuguauaCACGCCUCG-GCGAGu---GGc -3'
miRNA:   3'- uCCGG----------GUGCGGAGCcCGCUUuuuuCC- -5'
5573 5' -55.5 NC_001806.1 + 46112 0.66 0.922821
Target:  5'- gGGGCCUgcgcggGCGCCUCcgccacccgcuGGGUccGGAGGGGc -3'
miRNA:   3'- -UCCGGG------UGCGGAG-----------CCCGcuUUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 33310 0.66 0.922821
Target:  5'- cGGCCgGCGCUuaGGGgGAGGAu--- -3'
miRNA:   3'- uCCGGgUGCGGagCCCgCUUUUuucc -5'
5573 5' -55.5 NC_001806.1 + 76832 0.66 0.920603
Target:  5'- cGGCCCGgGCCUCcuacgcgacaGGGCGcgcgccugcAGGc -3'
miRNA:   3'- uCCGGGUgCGGAG----------CCCGCuuuuu----UCC- -5'
5573 5' -55.5 NC_001806.1 + 74933 0.66 0.919479
Target:  5'- gGGcGCCCccugagguuacggcgGCGCUgCGGGCGGAcauguGGGGg -3'
miRNA:   3'- -UC-CGGG---------------UGCGGaGCCCGCUUuu---UUCC- -5'
5573 5' -55.5 NC_001806.1 + 27070 0.66 0.917204
Target:  5'- gAGGCCCGUGCC-CGGGCc-------- -3'
miRNA:   3'- -UCCGGGUGCGGaGCCCGcuuuuuucc -5'
5573 5' -55.5 NC_001806.1 + 22068 0.66 0.917204
Target:  5'- cGGGCCCcCGCCcccgGGGCGGGu----- -3'
miRNA:   3'- -UCCGGGuGCGGag--CCCGCUUuuuucc -5'
5573 5' -55.5 NC_001806.1 + 134227 0.66 0.917204
Target:  5'- uAGG-CCACGCagUCGGaGCGggGGGGcGGc -3'
miRNA:   3'- -UCCgGGUGCGg-AGCC-CGCuuUUUU-CC- -5'
5573 5' -55.5 NC_001806.1 + 64910 0.66 0.917204
Target:  5'- cGGCCuCugGCgUCGGcGCGugu--GGGu -3'
miRNA:   3'- uCCGG-GugCGgAGCC-CGCuuuuuUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.