miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 3' -64.2 NC_001806.1 + 43305 0.66 0.614811
Target:  5'- cGCGGCugcagGAGGCCcuGGCGgUCGuuaACGCGCu- -3'
miRNA:   3'- -CGCCG-----CUCCGG--CCGC-GGC---UGUGCGcc -5'
5575 3' -64.2 NC_001806.1 + 33778 0.66 0.614811
Target:  5'- uGCGGCGGccgccguguucGGUcuCGGUagccgGCCGGCGgGUGGa -3'
miRNA:   3'- -CGCCGCU-----------CCG--GCCG-----CGGCUGUgCGCC- -5'
5575 3' -64.2 NC_001806.1 + 51024 0.66 0.614811
Target:  5'- aGCGGCG-GGUCcGUGuuGGgCcCGCGGg -3'
miRNA:   3'- -CGCCGCuCCGGcCGCggCU-GuGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 140140 0.66 0.614811
Target:  5'- cGCGGCacacGGGGUgGGCGCCG-CGCc--- -3'
miRNA:   3'- -CGCCG----CUCCGgCCGCGGCuGUGcgcc -5'
5575 3' -64.2 NC_001806.1 + 132438 0.66 0.611955
Target:  5'- cCGGCGAGaaguucuccgcGCCGGCGCucgucgcccuuuucCGGCA-GUGGc -3'
miRNA:   3'- cGCCGCUC-----------CGGCCGCG--------------GCUGUgCGCC- -5'
5575 3' -64.2 NC_001806.1 + 21501 0.66 0.6091
Target:  5'- cCGGCGAccgggccccGGcCCGGgGCCGcgaacgggaggccccGCuACGCGGc -3'
miRNA:   3'- cGCCGCU---------CC-GGCCgCGGC---------------UG-UGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 56625 0.66 0.605295
Target:  5'- cCGcGCGAcccuGGCCGGUgcgaccucaucgGCCGGCGgccCGUGGg -3'
miRNA:   3'- cGC-CGCU----CCGGCCG------------CGGCUGU---GCGCC- -5'
5575 3' -64.2 NC_001806.1 + 117974 0.66 0.605295
Target:  5'- cCGGUcccgGAGGCUcgGGUGuuGGCcgugaACGCGGg -3'
miRNA:   3'- cGCCG----CUCCGG--CCGCggCUG-----UGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 33975 0.66 0.605295
Target:  5'- uCGuGCG-GGCCGGggguCGCCGGgGCagggGCGGg -3'
miRNA:   3'- cGC-CGCuCCGGCC----GCGGCUgUG----CGCC- -5'
5575 3' -64.2 NC_001806.1 + 69416 0.66 0.605295
Target:  5'- gGCGGCGGGcGUCcccGCGCgGACGCccacCGGc -3'
miRNA:   3'- -CGCCGCUC-CGGc--CGCGgCUGUGc---GCC- -5'
5575 3' -64.2 NC_001806.1 + 3860 0.66 0.605295
Target:  5'- -aGGUGGGGCaCGGC-CCGcgcCACGCu- -3'
miRNA:   3'- cgCCGCUCCG-GCCGcGGCu--GUGCGcc -5'
5575 3' -64.2 NC_001806.1 + 101021 0.66 0.605295
Target:  5'- aGCGGC--GGCCcgcGGCGCuCGaaaaucgcagcGCugGCGGc -3'
miRNA:   3'- -CGCCGcuCCGG---CCGCG-GC-----------UGugCGCC- -5'
5575 3' -64.2 NC_001806.1 + 76271 0.66 0.605295
Target:  5'- cGUGGCGcuGGaCCuGGcCGCCG-C-CGCGGa -3'
miRNA:   3'- -CGCCGCu-CC-GG-CC-GCGGCuGuGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 74530 0.66 0.605295
Target:  5'- uGCGGCccuGGGCCaGCaGCUGGacagcgACGCGGc -3'
miRNA:   3'- -CGCCGc--UCCGGcCG-CGGCUg-----UGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 103719 0.66 0.605295
Target:  5'- uCGGCGGgugguaacuGGCgGGcCGCUGACucGgGCGGg -3'
miRNA:   3'- cGCCGCU---------CCGgCC-GCGGCUG--UgCGCC- -5'
5575 3' -64.2 NC_001806.1 + 95533 0.66 0.604344
Target:  5'- aGCGGuCGuuGGCCagccuggGGCGCUGcguccgcgaGCAgCGCGGg -3'
miRNA:   3'- -CGCC-GCu-CCGG-------CCGCGGC---------UGU-GCGCC- -5'
5575 3' -64.2 NC_001806.1 + 112378 0.66 0.601493
Target:  5'- aCGGCcacgcagcccuccGuGGCCGuGCcccgucugacgcauGCCGACACGCGcGg -3'
miRNA:   3'- cGCCG-------------CuCCGGC-CG--------------CGGCUGUGCGC-C- -5'
5575 3' -64.2 NC_001806.1 + 99483 0.66 0.599593
Target:  5'- gGCGGCGcGGGCCGugucaacguccacguGUGCUGcgcuGCugGCGu -3'
miRNA:   3'- -CGCCGC-UCCGGC---------------CGCGGC----UGugCGCc -5'
5575 3' -64.2 NC_001806.1 + 26831 0.66 0.595796
Target:  5'- gGCGGgGAGGg-GGCGCCGGagcccccCGCGa -3'
miRNA:   3'- -CGCCgCUCCggCCGCGGCUgu-----GCGCc -5'
5575 3' -64.2 NC_001806.1 + 29609 0.66 0.595796
Target:  5'- aCGGUGAGGCgGGgGgCGGCAa--GGa -3'
miRNA:   3'- cGCCGCUCCGgCCgCgGCUGUgcgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.