miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 5' -58.7 NC_001806.1 + 118447 0.66 0.810741
Target:  5'- aUCCggGCGAAUaaAGuUGGCCUCGUCGAc -3'
miRNA:   3'- aAGG--UGCUUGggUC-GCUGGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 90505 0.66 0.810741
Target:  5'- -cCCcCG-GCCCGGCGACCUCaaacaCGAg -3'
miRNA:   3'- aaGGuGCuUGGGUCGCUGGAGcg---GCU- -5'
5575 5' -58.7 NC_001806.1 + 40589 0.66 0.810741
Target:  5'- gUCgGCGuGCgCGGCGACaaaCGCCGGa -3'
miRNA:   3'- aAGgUGCuUGgGUCGCUGga-GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 1543 0.66 0.810741
Target:  5'- cUCCGCG-GCCCGcGCcACCggGCCGGg -3'
miRNA:   3'- aAGGUGCuUGGGU-CGcUGGagCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 26486 0.66 0.810741
Target:  5'- -cCCGCGGucaggagcgcGCCC-GCGGCCgcccCGCCGc -3'
miRNA:   3'- aaGGUGCU----------UGGGuCGCUGGa---GCGGCu -5'
5575 5' -58.7 NC_001806.1 + 23693 0.66 0.810741
Target:  5'- -cCCGCGGGCCC--UGGCCucgaUCGCCGc -3'
miRNA:   3'- aaGGUGCUUGGGucGCUGG----AGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 2117 0.66 0.810741
Target:  5'- cUCCACGGcCCCGGCGAaggccaggucCCgCGUgGAc -3'
miRNA:   3'- aAGGUGCUuGGGUCGCU----------GGaGCGgCU- -5'
5575 5' -58.7 NC_001806.1 + 70145 0.66 0.809877
Target:  5'- cUCCuCGAaccggccGCCCggGGCGGCCUCgGCCc- -3'
miRNA:   3'- aAGGuGCU-------UGGG--UCGCUGGAG-CGGcu -5'
5575 5' -58.7 NC_001806.1 + 134830 0.66 0.809877
Target:  5'- -aCCGCGGcuggcggucgccgACCUGGCGcACCUCGCa-- -3'
miRNA:   3'- aaGGUGCU-------------UGGGUCGC-UGGAGCGgcu -5'
5575 5' -58.7 NC_001806.1 + 71956 0.66 0.808143
Target:  5'- -aCCGCGGGCCCugGGCcGCCgcgcauguguucgaUCGUCGAg -3'
miRNA:   3'- aaGGUGCUUGGG--UCGcUGG--------------AGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 23475 0.66 0.805531
Target:  5'- -gCCGCGGcgcaggcccgcccgcGCCCcGUGGCCgugucgCGCCGGc -3'
miRNA:   3'- aaGGUGCU---------------UGGGuCGCUGGa-----GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 126461 0.66 0.802026
Target:  5'- aUCC-CGaAGCCCAGCGugCgauacuucgCGCCc- -3'
miRNA:   3'- aAGGuGC-UUGGGUCGCugGa--------GCGGcu -5'
5575 5' -58.7 NC_001806.1 + 16708 0.66 0.802026
Target:  5'- -gCCACGucgUCCggGGCGuCCUCGUCGAc -3'
miRNA:   3'- aaGGUGCuu-GGG--UCGCuGGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 65564 0.66 0.802026
Target:  5'- --aCGCGGACCCgGGCG-UCUUGUCGGa -3'
miRNA:   3'- aagGUGCUUGGG-UCGCuGGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 87658 0.66 0.793162
Target:  5'- gUUgCGCGGGCCCGGCGGCgUaguaGgCGGg -3'
miRNA:   3'- -AAgGUGCUUGGGUCGCUGgAg---CgGCU- -5'
5575 5' -58.7 NC_001806.1 + 3473 0.66 0.793162
Target:  5'- -gCCugGGcgcggcGCCCGGCGuCgUCGUCGGc -3'
miRNA:   3'- aaGGugCU------UGGGUCGCuGgAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 135810 0.66 0.793162
Target:  5'- -cCCGCaGACCC-GCGGcuguuuccgcCCUUGCCGAa -3'
miRNA:   3'- aaGGUGcUUGGGuCGCU----------GGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 150817 0.66 0.790475
Target:  5'- cUCCGCGGaagACCCAgGCcGCCUCGgguguaacguuagaCCGAg -3'
miRNA:   3'- aAGGUGCU---UGGGU-CGcUGGAGC--------------GGCU- -5'
5575 5' -58.7 NC_001806.1 + 84194 0.66 0.784157
Target:  5'- -aCC-CGAuGCCCAGCccGACCUCGaCCu- -3'
miRNA:   3'- aaGGuGCU-UGGGUCG--CUGGAGC-GGcu -5'
5575 5' -58.7 NC_001806.1 + 78592 0.66 0.784157
Target:  5'- -cCCACGGG-CCAGC-ACgUCGCCGu -3'
miRNA:   3'- aaGGUGCUUgGGUCGcUGgAGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.