Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5576 | 3' | -61.1 | NC_001806.1 | + | 22240 | 0.66 | 0.745147 |
Target: 5'- aCGCGGcugcuguacacCCCGGACGCgGAggCCaugggguGGCUCc -3' miRNA: 3'- -GCGCU-----------GGGCCUGCGgCUa-GGg------CUGAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 66824 | 0.66 | 0.745147 |
Target: 5'- gGcCGGCCCgGGugGCCGGUgugCgCCGcCUCc -3' miRNA: 3'- gC-GCUGGG-CCugCGGCUA---G-GGCuGAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 74575 | 0.66 | 0.745147 |
Target: 5'- uGCG-CCCGGcGCGUCGcccuacCCCGACg- -3' miRNA: 3'- gCGCuGGGCC-UGCGGCua----GGGCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 63753 | 0.66 | 0.745147 |
Target: 5'- -aCGGCCCGcACGUCGGUgugCCaCGGCUCc -3' miRNA: 3'- gcGCUGGGCcUGCGGCUA---GG-GCUGAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 51404 | 0.66 | 0.745147 |
Target: 5'- gCGCGGCCgUGGGCGCCuugcggcaGcgCuCCGACg- -3' miRNA: 3'- -GCGCUGG-GCCUGCGG--------CuaG-GGCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 144561 | 0.66 | 0.744223 |
Target: 5'- uGCGAaagacuuUCCGGGCGCgucCGGgugCCgCGGCUCu -3' miRNA: 3'- gCGCU-------GGGCCUGCG---GCUa--GG-GCUGAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 149435 | 0.66 | 0.735868 |
Target: 5'- gGCGAcCCCGGGCcCUGcgUCUGAgUCa -3' miRNA: 3'- gCGCU-GGGCCUGcGGCuaGGGCUgAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 33380 | 0.66 | 0.735868 |
Target: 5'- cCGCGgcACCCGGACGCg---CCCGGa-- -3' miRNA: 3'- -GCGC--UGGGCCUGCGgcuaGGGCUgag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 97368 | 0.66 | 0.735868 |
Target: 5'- --aGGCCCGGgccacgGCGCCGAccaCCCGgaaccuGCUCa -3' miRNA: 3'- gcgCUGGGCC------UGCGGCUa--GGGC------UGAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 21321 | 0.66 | 0.735868 |
Target: 5'- aCGcCGGCgaGGACGCCGGggaCgCCGuCUCg -3' miRNA: 3'- -GC-GCUGggCCUGCGGCUa--G-GGCuGAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 46064 | 0.66 | 0.735868 |
Target: 5'- gGUccCCCGGACGCgGcGUCCCGuuUCc -3' miRNA: 3'- gCGcuGGGCCUGCGgC-UAGGGCugAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 76576 | 0.66 | 0.726506 |
Target: 5'- cCGCG-CgCGaGCGCCGggCCCaGCUCg -3' miRNA: 3'- -GCGCuGgGCcUGCGGCuaGGGcUGAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 123119 | 0.66 | 0.726506 |
Target: 5'- uCGCGcacACCgGGugGCgGGUCgCGGCg- -3' miRNA: 3'- -GCGC---UGGgCCugCGgCUAGgGCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 24792 | 0.66 | 0.726506 |
Target: 5'- aCGaCGGCCCGGGggcccugcCGCCGGcgccgCCCGGgaUUCg -3' miRNA: 3'- -GC-GCUGGGCCU--------GCGGCUa----GGGCU--GAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 57378 | 0.66 | 0.726506 |
Target: 5'- -aCGGCCCGGugGCUGucguugcggagcAUCCCGcgcCUUg -3' miRNA: 3'- gcGCUGGGCCugCGGC------------UAGGGCu--GAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 62743 | 0.66 | 0.726506 |
Target: 5'- aGCGugUUGGGgcgcagcgucuCGCCG-UCCCGGgUCa -3' miRNA: 3'- gCGCugGGCCU-----------GCGGCuAGGGCUgAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 6082 | 0.66 | 0.726506 |
Target: 5'- gGCgGGCCCGGGCGgCGGggggcgggucUCuCCGGCg- -3' miRNA: 3'- gCG-CUGGGCCUGCgGCU----------AG-GGCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 24676 | 0.66 | 0.717071 |
Target: 5'- gCGCGAggCGGugcGCGCCGG-CCCGGCcCg -3' miRNA: 3'- -GCGCUggGCC---UGCGGCUaGGGCUGaG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 21981 | 0.66 | 0.717071 |
Target: 5'- gGuCGAgCUGGACGCCGA-CgCGAcCUCc -3' miRNA: 3'- gC-GCUgGGCCUGCGGCUaGgGCU-GAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 24632 | 0.66 | 0.717071 |
Target: 5'- uGgGGCCUGGgcGCGCCGcugcggCCCGugUa -3' miRNA: 3'- gCgCUGGGCC--UGCGGCua----GGGCugAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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