miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5577 3' -61.5 NC_001806.1 + 43178 0.66 0.693316
Target:  5'- cGCGCGCcCAAggGCCaGUaCCCgCCCGCg -3'
miRNA:   3'- -CGCGCGaGUUggUGG-CGaGGG-GGGUG- -5'
5577 3' -61.5 NC_001806.1 + 48958 0.66 0.693316
Target:  5'- uUGCGC-CGGCCccgUCGCUCCCgUCCAUu -3'
miRNA:   3'- cGCGCGaGUUGGu--GGCGAGGG-GGGUG- -5'
5577 3' -61.5 NC_001806.1 + 129839 0.66 0.693316
Target:  5'- cGCGUGCUguugcuUCACuCGCUCaCCCCCc- -3'
miRNA:   3'- -CGCGCGAguu---GGUG-GCGAG-GGGGGug -5'
5577 3' -61.5 NC_001806.1 + 5044 0.66 0.693316
Target:  5'- cCGCGCc---CCACC-CgagggCCCCCCGCu -3'
miRNA:   3'- cGCGCGaguuGGUGGcGa----GGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 132222 0.66 0.693316
Target:  5'- aGUGCGCgu--CCGCCGCUUCgCUgACc -3'
miRNA:   3'- -CGCGCGaguuGGUGGCGAGGgGGgUG- -5'
5577 3' -61.5 NC_001806.1 + 113466 0.66 0.693316
Target:  5'- gGgGCGUUCGACgACCGCaacuaCCCgGCg -3'
miRNA:   3'- -CgCGCGAGUUGgUGGCGagg--GGGgUG- -5'
5577 3' -61.5 NC_001806.1 + 90918 0.66 0.690394
Target:  5'- -gGCGUUUGACgaaaaccacgagggCGCCGCcCUCCCCGCc -3'
miRNA:   3'- cgCGCGAGUUG--------------GUGGCGaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 77956 0.66 0.683559
Target:  5'- gGUGaCGCggCGgccccgggGCCGCCGCUCggaCCCCAg -3'
miRNA:   3'- -CGC-GCGa-GU--------UGGUGGCGAGg--GGGGUg -5'
5577 3' -61.5 NC_001806.1 + 91403 0.66 0.683559
Target:  5'- cCGgGUUCGAgggucggcCCACCGCgCCCCUCGu -3'
miRNA:   3'- cGCgCGAGUU--------GGUGGCGaGGGGGGUg -5'
5577 3' -61.5 NC_001806.1 + 136056 0.66 0.683559
Target:  5'- cCGCGCUC-GCUGUCGCUCUugcgCCCCAg -3'
miRNA:   3'- cGCGCGAGuUGGUGGCGAGG----GGGGUg -5'
5577 3' -61.5 NC_001806.1 + 21012 0.66 0.683559
Target:  5'- cGUGgGuCUC-GCC-CC-CUCCCCCCAUc -3'
miRNA:   3'- -CGCgC-GAGuUGGuGGcGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 134905 0.66 0.683559
Target:  5'- cCGC-CUCGACCagGCUGCggUCCCCgGCg -3'
miRNA:   3'- cGCGcGAGUUGG--UGGCGa-GGGGGgUG- -5'
5577 3' -61.5 NC_001806.1 + 119175 0.66 0.683559
Target:  5'- aCGuCGCUCugcuuggcGCCGCCGC-CCCgCCGg -3'
miRNA:   3'- cGC-GCGAGu-------UGGUGGCGaGGGgGGUg -5'
5577 3' -61.5 NC_001806.1 + 19745 0.66 0.673763
Target:  5'- cCGCGUccccccuccUCcGCCcCCGCgUCCCCCCu- -3'
miRNA:   3'- cGCGCG---------AGuUGGuGGCG-AGGGGGGug -5'
5577 3' -61.5 NC_001806.1 + 148928 0.66 0.673763
Target:  5'- -gGUGgUCGGcgucCCcCCGC-CCCCCCACu -3'
miRNA:   3'- cgCGCgAGUU----GGuGGCGaGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 129608 0.66 0.673763
Target:  5'- gGCGCGCcgGugC-CUGUUUCUCCCGCg -3'
miRNA:   3'- -CGCGCGagUugGuGGCGAGGGGGGUG- -5'
5577 3' -61.5 NC_001806.1 + 19789 0.66 0.673763
Target:  5'- cCGCGUccccccuccUCcGCCcCCGCgUCCCCCCu- -3'
miRNA:   3'- cGCGCG---------AGuUGGuGGCG-AGGGGGGug -5'
5577 3' -61.5 NC_001806.1 + 23625 0.66 0.673763
Target:  5'- cGCGCcguggccgaGCUCAcggACCAcCCGCuguuccccgUCCCCUgGCg -3'
miRNA:   3'- -CGCG---------CGAGU---UGGU-GGCG---------AGGGGGgUG- -5'
5577 3' -61.5 NC_001806.1 + 75366 0.66 0.673763
Target:  5'- cGCGCGggUGGCCAUCGC-CCagCUCACg -3'
miRNA:   3'- -CGCGCgaGUUGGUGGCGaGGg-GGGUG- -5'
5577 3' -61.5 NC_001806.1 + 45073 0.66 0.672782
Target:  5'- cGCGCGCcuguugaccagguUCAGuuGCaCGaCUCcgCCCCCGCg -3'
miRNA:   3'- -CGCGCG-------------AGUUggUG-GC-GAG--GGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.