miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5581 5' -64.1 NC_001806.1 + 9659 0.65 0.60789
Target:  5'- gCCCGCCaggcACGCCUgCG-CCaacaggucauacaCGCCCACa -3'
miRNA:   3'- -GGGCGGc---UGCGGA-GCaGGc------------GCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 50930 0.66 0.602159
Target:  5'- cCCCGCCuccucaGCGCCcCGggcccCCGUGUCCGg -3'
miRNA:   3'- -GGGCGGc-----UGCGGaGCa----GGCGCGGGUg -5'
5581 5' -64.1 NC_001806.1 + 51011 0.66 0.602159
Target:  5'- cCCCGCCcccguaaGCGgCggGUCCGUguuggGCCCGCg -3'
miRNA:   3'- -GGGCGGc------UGCgGagCAGGCG-----CGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 24300 0.66 0.602159
Target:  5'- gCUgGCCGGCGgCgCGggacCUGCGCCgCACg -3'
miRNA:   3'- -GGgCGGCUGCgGaGCa---GGCGCGG-GUG- -5'
5581 5' -64.1 NC_001806.1 + 56911 0.66 0.602159
Target:  5'- gCCCGCCGACGaCCa--UCCccaggGUGCCgACg -3'
miRNA:   3'- -GGGCGGCUGC-GGagcAGG-----CGCGGgUG- -5'
5581 5' -64.1 NC_001806.1 + 113990 0.66 0.602159
Target:  5'- gCCGCgGACGCCgCGgaugaCCG-GCCgCACc -3'
miRNA:   3'- gGGCGgCUGCGGaGCa----GGCgCGG-GUG- -5'
5581 5' -64.1 NC_001806.1 + 2877 0.66 0.592623
Target:  5'- -gCGuCCGA-GCCgggggCGUCCGCGCCg-- -3'
miRNA:   3'- ggGC-GGCUgCGGa----GCAGGCGCGGgug -5'
5581 5' -64.1 NC_001806.1 + 130996 0.66 0.592623
Target:  5'- gUCGCCGACGCCcuaagCGgCUGuCcCCCGCg -3'
miRNA:   3'- gGGCGGCUGCGGa----GCaGGC-GcGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 111086 0.66 0.592623
Target:  5'- aCgGCCcugugUGCCUUGUUCGCcgccGCCCACg -3'
miRNA:   3'- gGgCGGcu---GCGGAGCAGGCG----CGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 80593 0.66 0.592623
Target:  5'- aCCCGgggaguauCCGGCGgUUCGguUCCGgGCaCCGCa -3'
miRNA:   3'- -GGGC--------GGCUGCgGAGC--AGGCgCG-GGUG- -5'
5581 5' -64.1 NC_001806.1 + 106872 0.66 0.583113
Target:  5'- -aCGCgGGCGCCgagcaGggcCCGCGCCCc- -3'
miRNA:   3'- ggGCGgCUGCGGag---Ca--GGCGCGGGug -5'
5581 5' -64.1 NC_001806.1 + 84096 0.66 0.583113
Target:  5'- gCCGCgGAgGCC-CGUCgCGCcacgGUCCGCc -3'
miRNA:   3'- gGGCGgCUgCGGaGCAG-GCG----CGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 33133 0.66 0.583113
Target:  5'- aCCGCCGcggucggggGCcCCUCGUCCcGgGCCgUACg -3'
miRNA:   3'- gGGCGGC---------UGcGGAGCAGG-CgCGG-GUG- -5'
5581 5' -64.1 NC_001806.1 + 115085 0.66 0.583113
Target:  5'- gCCUgggGCCGGCccaGCC-CGUCCccguguucggguGCGCCCAg -3'
miRNA:   3'- -GGG---CGGCUG---CGGaGCAGG------------CGCGGGUg -5'
5581 5' -64.1 NC_001806.1 + 30312 0.66 0.583113
Target:  5'- cCCCGCgGACGCg-CG-CCGUguGCCC-Ca -3'
miRNA:   3'- -GGGCGgCUGCGgaGCaGGCG--CGGGuG- -5'
5581 5' -64.1 NC_001806.1 + 75623 0.66 0.573633
Target:  5'- -gCGCC-ACGCgaCG-CCGCGCCgACg -3'
miRNA:   3'- ggGCGGcUGCGgaGCaGGCGCGGgUG- -5'
5581 5' -64.1 NC_001806.1 + 21822 0.66 0.573633
Target:  5'- cCCCGCCcGgGCCacccccccucUCcgaggCCGCGCCCAa -3'
miRNA:   3'- -GGGCGGcUgCGG----------AGca---GGCGCGGGUg -5'
5581 5' -64.1 NC_001806.1 + 74172 0.66 0.573633
Target:  5'- aCCGCCgguuucacGugGCUUCGgccgccgUCGUGCCCGu -3'
miRNA:   3'- gGGCGG--------CugCGGAGCa------GGCGCGGGUg -5'
5581 5' -64.1 NC_001806.1 + 60715 0.66 0.573633
Target:  5'- aCCCG-CGACGCCaCGUCauccaCGaCGCCC-Ca -3'
miRNA:   3'- -GGGCgGCUGCGGaGCAG-----GC-GCGGGuG- -5'
5581 5' -64.1 NC_001806.1 + 143545 0.66 0.573633
Target:  5'- gCCCGgcCCGGCccgGCC-CGgccaCCGcCGCCCACc -3'
miRNA:   3'- -GGGC--GGCUG---CGGaGCa---GGC-GCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.