miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5583 3' -60.2 NC_001806.1 + 55700 0.66 0.785273
Target:  5'- gGGGUCGAugugggggugaccuCCGGGCUGGCggcugaCCCGgGGGa -3'
miRNA:   3'- -CCCGGCUu-------------GGCUUGGUCG------GGGCgUCC- -5'
5583 3' -60.2 NC_001806.1 + 82428 0.66 0.781734
Target:  5'- gGGGCCcgccuccCCGucCCcGCCCCGCAa- -3'
miRNA:   3'- -CCCGGcuu----GGCuuGGuCGGGGCGUcc -5'
5583 3' -60.2 NC_001806.1 + 41520 0.66 0.781734
Target:  5'- aGGCC-AGCgCGGcaaauGCCuGUCCCGUGGGg -3'
miRNA:   3'- cCCGGcUUG-GCU-----UGGuCGGGGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 42005 0.66 0.781734
Target:  5'- aGGGCUGcuCCGuGCUGGCC--GCGGGg -3'
miRNA:   3'- -CCCGGCuuGGCuUGGUCGGggCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 108553 0.66 0.781734
Target:  5'- uGGCCGcGCCc-GCC-GCUCCGCGGu -3'
miRNA:   3'- cCCGGCuUGGcuUGGuCGGGGCGUCc -5'
5583 3' -60.2 NC_001806.1 + 23923 0.66 0.780846
Target:  5'- cGGGCgaGGACCuGGCCGGCggcggggCCUGgGGGg -3'
miRNA:   3'- -CCCGg-CUUGGcUUGGUCG-------GGGCgUCC- -5'
5583 3' -60.2 NC_001806.1 + 98072 0.66 0.780846
Target:  5'- uGGCCGucuccacGugCGuGCCGGUCgCCGCGGa -3'
miRNA:   3'- cCCGGC-------UugGCuUGGUCGG-GGCGUCc -5'
5583 3' -60.2 NC_001806.1 + 107007 0.66 0.779067
Target:  5'- uGGCCcacucgcgcgcgcuuGCCGggUUGGCcgCCCGCGGGg -3'
miRNA:   3'- cCCGGcu-------------UGGCuuGGUCG--GGGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 2221 0.66 0.779067
Target:  5'- cGGCCGuguccggcccgcacAGCCGGuugGCCagGGCCgCCaGCAGGc -3'
miRNA:   3'- cCCGGC--------------UUGGCU---UGG--UCGG-GG-CGUCC- -5'
5583 3' -60.2 NC_001806.1 + 60034 0.66 0.772801
Target:  5'- -uGCCGuccGCCGcgcccucgaAGCCGGCCCUGCGu- -3'
miRNA:   3'- ccCGGCu--UGGC---------UUGGUCGGGGCGUcc -5'
5583 3' -60.2 NC_001806.1 + 77391 0.66 0.772801
Target:  5'- cGGGCgCGGcgGCCGcGCCcgcGCCCCuGCucguGGa -3'
miRNA:   3'- -CCCG-GCU--UGGCuUGGu--CGGGG-CGu---CC- -5'
5583 3' -60.2 NC_001806.1 + 23432 0.66 0.772801
Target:  5'- gGGGcCCGAGCCcgcccccgcCCAG-CCCGCGGc -3'
miRNA:   3'- -CCC-GGCUUGGcuu------GGUCgGGGCGUCc -5'
5583 3' -60.2 NC_001806.1 + 6900 0.66 0.772801
Target:  5'- cGGCgGGACCGuGACCgacAGuCCCCGUAa- -3'
miRNA:   3'- cCCGgCUUGGC-UUGG---UC-GGGGCGUcc -5'
5583 3' -60.2 NC_001806.1 + 98239 0.66 0.772801
Target:  5'- cGGCUGAcgcgcgaugcgAUCGAGCCGuGCaCCGUGGGa -3'
miRNA:   3'- cCCGGCU-----------UGGCUUGGU-CGgGGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 40558 0.66 0.772801
Target:  5'- uGGGCgGGGCgUGAAaauggaAGCgCCGCGGGu -3'
miRNA:   3'- -CCCGgCUUG-GCUUgg----UCGgGGCGUCC- -5'
5583 3' -60.2 NC_001806.1 + 4723 0.66 0.772801
Target:  5'- gGGGCCuc-CCGuuCgCGGCCCCGggcCGGGg -3'
miRNA:   3'- -CCCGGcuuGGCuuG-GUCGGGGC---GUCC- -5'
5583 3' -60.2 NC_001806.1 + 91864 0.66 0.772801
Target:  5'- uGGCCGAACuCGAGa---CCCUGCAGu -3'
miRNA:   3'- cCCGGCUUG-GCUUggucGGGGCGUCc -5'
5583 3' -60.2 NC_001806.1 + 83779 0.66 0.772801
Target:  5'- cGGGCCcucauCgGAACCuuGGCCuCCGgGGGc -3'
miRNA:   3'- -CCCGGcuu--GgCUUGG--UCGG-GGCgUCC- -5'
5583 3' -60.2 NC_001806.1 + 123213 0.66 0.771901
Target:  5'- aGGGUggcggaaUGGACCGAgauGCC-GCCCaCGCGGc -3'
miRNA:   3'- -CCCG-------GCUUGGCU---UGGuCGGG-GCGUCc -5'
5583 3' -60.2 NC_001806.1 + 20626 0.66 0.767385
Target:  5'- gGGGCCGGggguucgaccaacggGCCGcGGCCacgGGCCCC-CGGc -3'
miRNA:   3'- -CCCGGCU---------------UGGC-UUGG---UCGGGGcGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.