miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5585 5' -59.9 NC_001806.1 + 30746 0.66 0.771874
Target:  5'- cCGcCUCUuccgCCGCCGGGgccgcguccuccuccGcuuccgccuccucgGGCGGGGCCg -3'
miRNA:   3'- -GC-GAGAca--GGUGGCCC---------------U--------------UCGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 82703 0.66 0.770961
Target:  5'- aGCUCgccGUgCAcacacgcgguguCCGGGGucuGCGGGGCg -3'
miRNA:   3'- gCGAGa--CAgGU------------GGCCCUu--CGUCCCGg -5'
5585 5' -59.9 NC_001806.1 + 101005 0.66 0.770961
Target:  5'- gCGCUCc--UC-CCGGGAgAGCGGcGGCCc -3'
miRNA:   3'- -GCGAGacaGGuGGCCCU-UCGUC-CCGG- -5'
5585 5' -59.9 NC_001806.1 + 25931 0.66 0.770961
Target:  5'- gCGCgcgCgg-CgGgCGuGGggGCGGGGCCg -3'
miRNA:   3'- -GCGa--GacaGgUgGC-CCuuCGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 151546 0.66 0.770961
Target:  5'- gGCcCgggCgGCCGGGGgcGGCGgGGGCCg -3'
miRNA:   3'- gCGaGacaGgUGGCCCU--UCGU-CCCGG- -5'
5585 5' -59.9 NC_001806.1 + 2931 0.66 0.770961
Target:  5'- cCGC-Cg--CCuCCGGGcGGCcGGGCCg -3'
miRNA:   3'- -GCGaGacaGGuGGCCCuUCGuCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 151669 0.66 0.765464
Target:  5'- uGC-CUGUCUaacucgcuagucucgGCCGGGggGgCccGGGCUg -3'
miRNA:   3'- gCGaGACAGG---------------UGGCCCuuC-Gu-CCCGG- -5'
5585 5' -59.9 NC_001806.1 + 67490 0.66 0.761777
Target:  5'- cCGCccUCcgggGUCCcgaccccCUGGGGAGCccuGGGCCg -3'
miRNA:   3'- -GCG--AGa---CAGGu------GGCCCUUCGu--CCCGG- -5'
5585 5' -59.9 NC_001806.1 + 23097 0.66 0.761777
Target:  5'- aGC-CUGgUCGCCGGGGccCuGGGCCc -3'
miRNA:   3'- gCGaGACaGGUGGCCCUucGuCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 30494 0.66 0.761777
Target:  5'- cCGcCUCUGUCgAgCaGGAGGCGGcGGUg -3'
miRNA:   3'- -GC-GAGACAGgUgGcCCUUCGUC-CCGg -5'
5585 5' -59.9 NC_001806.1 + 38059 0.66 0.752484
Target:  5'- aCGCccaCggcGUCCGCCGcGGGcaGGCuGGGCUu -3'
miRNA:   3'- -GCGa--Ga--CAGGUGGC-CCU--UCGuCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 2222 0.66 0.752484
Target:  5'- gGCcgUGUCCggcccgcacaGCCGGuuGGcCAGGGCCg -3'
miRNA:   3'- gCGagACAGG----------UGGCCcuUC-GUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 92907 0.66 0.752484
Target:  5'- cCGCgugGUCCGCgcaGGGcgGGGC-GGGCCu -3'
miRNA:   3'- -GCGagaCAGGUGg--CCC--UUCGuCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 22864 0.66 0.752484
Target:  5'- gGCgacCUGgcggCCGucCCGGGGcuGGcCGGGGCCc -3'
miRNA:   3'- gCGa--GACa---GGU--GGCCCU--UC-GUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 135096 0.66 0.74309
Target:  5'- gGCg----CCgACCGGGGAGgGGGGCg -3'
miRNA:   3'- gCGagacaGG-UGGCCCUUCgUCCCGg -5'
5585 5' -59.9 NC_001806.1 + 36201 0.66 0.74309
Target:  5'- uGCUCUG-CCGCgCGGGcGGCcauGCCg -3'
miRNA:   3'- gCGAGACaGGUG-GCCCuUCGuccCGG- -5'
5585 5' -59.9 NC_001806.1 + 132766 0.66 0.74309
Target:  5'- uGCcucCUGcCCGCggugCGGGAGGCGGuGGCg -3'
miRNA:   3'- gCGa--GACaGGUG----GCCCUUCGUC-CCGg -5'
5585 5' -59.9 NC_001806.1 + 89309 0.66 0.732652
Target:  5'- cCGCcCUGgCCGCCgacuuuccuccggGGGAcAGC-GGGCCg -3'
miRNA:   3'- -GCGaGACaGGUGG-------------CCCU-UCGuCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 95934 0.66 0.729788
Target:  5'- aGCUCgcccgGUUCAUcaugggggCGGGggGCucgggugcugauuGGGCCg -3'
miRNA:   3'- gCGAGa----CAGGUG--------GCCCuuCGu------------CCCGG- -5'
5585 5' -59.9 NC_001806.1 + 41607 0.66 0.724037
Target:  5'- gCGCcgCga-UCGCCGGGGGuGUGGGGCCc -3'
miRNA:   3'- -GCGa-GacaGGUGGCCCUU-CGUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.