miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5589 5' -55.7 NC_001806.1 + 10630 0.66 0.934022
Target:  5'- aGACUCcGGuuaaccACGGCCGCGcGCUccugCCAc -3'
miRNA:   3'- cCUGAGcCC------UGCCGGCGUuUGAa---GGU- -5'
5589 5' -55.7 NC_001806.1 + 57744 0.66 0.934022
Target:  5'- cGGGCgucuggagcggCGGGACgGGCCGCcgucccgUCCGc -3'
miRNA:   3'- -CCUGa----------GCCCUG-CCGGCGuuuga--AGGU- -5'
5589 5' -55.7 NC_001806.1 + 2791 0.66 0.934022
Target:  5'- cGGCcCGGGGC-GCCGCGGGCUgggCgGg -3'
miRNA:   3'- cCUGaGCCCUGcCGGCGUUUGAa--GgU- -5'
5589 5' -55.7 NC_001806.1 + 21611 0.66 0.928942
Target:  5'- aGACgUCGucACGGCCGguGGCggCCAu -3'
miRNA:   3'- cCUG-AGCccUGCCGGCguUUGaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 37759 0.66 0.928942
Target:  5'- uGGugUCGGcGGCGGgCGCcuuucGCU-CCGg -3'
miRNA:   3'- -CCugAGCC-CUGCCgGCGuu---UGAaGGU- -5'
5589 5' -55.7 NC_001806.1 + 2598 0.66 0.923625
Target:  5'- gGGACggggaacagCGGGugGuCCGUGAGCUcggCCAc -3'
miRNA:   3'- -CCUGa--------GCCCugCcGGCGUUUGAa--GGU- -5'
5589 5' -55.7 NC_001806.1 + 85588 0.66 0.923625
Target:  5'- cGGACgCGGaGAuuccgaccguguCGGCCGCAGACaUUUAu -3'
miRNA:   3'- -CCUGaGCC-CU------------GCCGGCGUUUGaAGGU- -5'
5589 5' -55.7 NC_001806.1 + 133237 0.66 0.923625
Target:  5'- cGGGCcaUCGaGACGGCCGUggGag-CCGu -3'
miRNA:   3'- -CCUG--AGCcCUGCCGGCGuuUgaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 141420 0.66 0.921984
Target:  5'- aGGC-CGGGGCGGCgCGCGgccaaccggcggauAACU-CCGc -3'
miRNA:   3'- cCUGaGCCCUGCCG-GCGU--------------UUGAaGGU- -5'
5589 5' -55.7 NC_001806.1 + 77385 0.66 0.918071
Target:  5'- cGGGCgCGGGcgcgGCGGCCGCGccCgcgCCc -3'
miRNA:   3'- -CCUGaGCCC----UGCCGGCGUuuGaa-GGu -5'
5589 5' -55.7 NC_001806.1 + 23946 0.66 0.912283
Target:  5'- gGGGCcUGGGGgGGCCGCcGGaguggUCCGc -3'
miRNA:   3'- -CCUGaGCCCUgCCGGCGuUUga---AGGU- -5'
5589 5' -55.7 NC_001806.1 + 75558 0.66 0.912283
Target:  5'- cGAa--GGGACGGCCGgGGACcacUCCc -3'
miRNA:   3'- cCUgagCCCUGCCGGCgUUUGa--AGGu -5'
5589 5' -55.7 NC_001806.1 + 50327 0.66 0.912283
Target:  5'- uGACgCGGGA-GGCCGC---CUUCCu -3'
miRNA:   3'- cCUGaGCCCUgCCGGCGuuuGAAGGu -5'
5589 5' -55.7 NC_001806.1 + 95961 0.66 0.906259
Target:  5'- gGGGCUCGGGugcugauugGGCCGUcagcGAAUUUCa- -3'
miRNA:   3'- -CCUGAGCCCug-------CCGGCG----UUUGAAGgu -5'
5589 5' -55.7 NC_001806.1 + 5319 0.67 0.900004
Target:  5'- aGGACa-GGGACGGCCGaucccccuccCGcGCUUCg- -3'
miRNA:   3'- -CCUGagCCCUGCCGGC----------GUuUGAAGgu -5'
5589 5' -55.7 NC_001806.1 + 50360 0.67 0.900004
Target:  5'- uGGAUgugcuggCGGuGAUGGCggaGCAGACggUCCAg -3'
miRNA:   3'- -CCUGa------GCC-CUGCCGg--CGUUUGa-AGGU- -5'
5589 5' -55.7 NC_001806.1 + 70155 0.67 0.899366
Target:  5'- cGGccGCcCGGGGCGGCCucggccccacuauGCAGAUggCCGa -3'
miRNA:   3'- -CC--UGaGCCCUGCCGG-------------CGUUUGaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 5081 0.67 0.893519
Target:  5'- uGGGCUCgGGGugGGCgGCGGc---CCGu -3'
miRNA:   3'- -CCUGAG-CCCugCCGgCGUUugaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 5766 0.67 0.893519
Target:  5'- cGGGCagGGGGCGGggcCCGgGccccGACUUCCc -3'
miRNA:   3'- -CCUGagCCCUGCC---GGCgU----UUGAAGGu -5'
5589 5' -55.7 NC_001806.1 + 84070 0.67 0.893519
Target:  5'- gGGAgUCGGGGCcccaGCUGCGcGCUgCCGc -3'
miRNA:   3'- -CCUgAGCCCUGc---CGGCGUuUGAaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.