miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5590 3' -53.5 NC_001806.1 + 25916 0.66 0.978811
Target:  5'- -gUCCGGGCggCGUGcGCGCGCGCggcgggcgUGGg -3'
miRNA:   3'- ggGGGCUUG--GUACuUGCGCGUGa-------ACC- -5'
5590 3' -53.5 NC_001806.1 + 57301 0.66 0.978811
Target:  5'- aCCCCCGcGCCA-GGGCccccaCGCACgcgaggugUGGc -3'
miRNA:   3'- -GGGGGCuUGGUaCUUGc----GCGUGa-------ACC- -5'
5590 3' -53.5 NC_001806.1 + 49015 0.66 0.978811
Target:  5'- aCCCCGGccuCCAUc--CGCGCugUgGGg -3'
miRNA:   3'- gGGGGCUu--GGUAcuuGCGCGugAaCC- -5'
5590 3' -53.5 NC_001806.1 + 93198 0.66 0.978811
Target:  5'- gUCCCCGGGCCggGuuUGUGUGCgcGGc -3'
miRNA:   3'- -GGGGGCUUGGuaCuuGCGCGUGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 1900 0.66 0.978811
Target:  5'- aCCCCCGGGCCGaacACGCgGCcCgaGGc -3'
miRNA:   3'- -GGGGGCUUGGUacuUGCG-CGuGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 22536 0.66 0.978811
Target:  5'- gCCCCUGuuggcGCgCGaGAACGCgGCGCUgacgGGg -3'
miRNA:   3'- -GGGGGCu----UG-GUaCUUGCG-CGUGAa---CC- -5'
5590 3' -53.5 NC_001806.1 + 116445 0.66 0.978811
Target:  5'- cCCgCCCGuguucgagGGCCAagcgacGGACGUGCGCcUGGa -3'
miRNA:   3'- -GG-GGGC--------UUGGUa-----CUUGCGCGUGaACC- -5'
5590 3' -53.5 NC_001806.1 + 53833 0.66 0.978583
Target:  5'- -gCCCGAggaucuuGCCGacUGGACGCGUGCgacGGc -3'
miRNA:   3'- ggGGGCU-------UGGU--ACUUGCGCGUGaa-CC- -5'
5590 3' -53.5 NC_001806.1 + 5629 0.66 0.978121
Target:  5'- aCCCCCGGccccgcccauccgcGCCAUcugccaugggcgGGGCGCGaggGCgggUGGg -3'
miRNA:   3'- -GGGGGCU--------------UGGUA------------CUUGCGCg--UGa--ACC- -5'
5590 3' -53.5 NC_001806.1 + 26412 0.66 0.976446
Target:  5'- gCCCCCGGccGCCcgGGcccACGgGCGCc--- -3'
miRNA:   3'- -GGGGGCU--UGGuaCU---UGCgCGUGaacc -5'
5590 3' -53.5 NC_001806.1 + 132944 0.66 0.976446
Target:  5'- aCCCCCacggccggacGGGCCuagcaagacUGGACGCGCuggUGGu -3'
miRNA:   3'- -GGGGG----------CUUGGu--------ACUUGCGCGugaACC- -5'
5590 3' -53.5 NC_001806.1 + 95040 0.66 0.976446
Target:  5'- aCCgCCGcgguGGCCGUGGAacugGCGCugUUcGGg -3'
miRNA:   3'- -GGgGGC----UUGGUACUUg---CGCGugAA-CC- -5'
5590 3' -53.5 NC_001806.1 + 50741 0.66 0.976446
Target:  5'- uUgCCGAcACCGUGGugGCGUGCgUGa -3'
miRNA:   3'- gGgGGCU-UGGUACUugCGCGUGaACc -5'
5590 3' -53.5 NC_001806.1 + 143183 0.66 0.976446
Target:  5'- cCCCCCGAACCGccc-CGC-CGCUUu- -3'
miRNA:   3'- -GGGGGCUUGGUacuuGCGcGUGAAcc -5'
5590 3' -53.5 NC_001806.1 + 122277 0.66 0.976446
Target:  5'- uCCCCCGAaaggagGCCAgcGACaGCGCGaugagGGg -3'
miRNA:   3'- -GGGGGCU------UGGUacUUG-CGCGUgaa--CC- -5'
5590 3' -53.5 NC_001806.1 + 50642 0.66 0.976446
Target:  5'- aCgCCCGGGCgugcggGGACGCGCACc-GGc -3'
miRNA:   3'- -GgGGGCUUGgua---CUUGCGCGUGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 75468 0.66 0.976446
Target:  5'- cUCCCUGAuCCAggccgcGACGCGCGCg--- -3'
miRNA:   3'- -GGGGGCUuGGUac----UUGCGCGUGaacc -5'
5590 3' -53.5 NC_001806.1 + 30221 0.66 0.976446
Target:  5'- gCCCCCGcgcGGCCGUGGccccguGCGUGCGa---- -3'
miRNA:   3'- -GGGGGC---UUGGUACU------UGCGCGUgaacc -5'
5590 3' -53.5 NC_001806.1 + 65697 0.66 0.976446
Target:  5'- uCCCCC-AACCG-GGGCcCGCGCUUcgacGGg -3'
miRNA:   3'- -GGGGGcUUGGUaCUUGcGCGUGAA----CC- -5'
5590 3' -53.5 NC_001806.1 + 119019 0.66 0.976446
Target:  5'- -aCCCGuacGCCGUGGcgGCGCuGCGCcuugcgUGGg -3'
miRNA:   3'- ggGGGCu--UGGUACU--UGCG-CGUGa-----ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.