miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5590 5' -60.2 NC_001806.1 + 138332 0.66 0.765715
Target:  5'- -gCCuGACGAUUgaaaagUGGCuCACGGCCa- -3'
miRNA:   3'- caGGuCUGCUAGa-----GCCG-GUGCCGGgc -5'
5590 5' -60.2 NC_001806.1 + 75240 0.66 0.765715
Target:  5'- cGUCCuGGuCGAcg-CGGUgACGGCCCu -3'
miRNA:   3'- -CAGGuCU-GCUagaGCCGgUGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 79520 0.66 0.756519
Target:  5'- -aCCGGGCG-UCcCGGCCgaaagcacGCGGCCgGc -3'
miRNA:   3'- caGGUCUGCuAGaGCCGG--------UGCCGGgC- -5'
5590 5' -60.2 NC_001806.1 + 136194 0.66 0.756519
Target:  5'- -aCCAGACGGUCccCGGuCCACaaggggGGCCa- -3'
miRNA:   3'- caGGUCUGCUAGa-GCC-GGUG------CCGGgc -5'
5590 5' -60.2 NC_001806.1 + 6088 0.66 0.755593
Target:  5'- -cCCGGGCGGcggggggcgggucUCUcCGGCgCACauaaaGGCCCGg -3'
miRNA:   3'- caGGUCUGCU-------------AGA-GCCG-GUG-----CCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 144781 0.66 0.755593
Target:  5'- uGUCCccucacgGGGCGAa---GGCCgcguACGGCCCGg -3'
miRNA:   3'- -CAGG-------UCUGCUagagCCGG----UGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 24905 0.66 0.747219
Target:  5'- ---gAGGCGggCUUGGCCAC-GCCCc -3'
miRNA:   3'- caggUCUGCuaGAGCCGGUGcCGGGc -5'
5590 5' -60.2 NC_001806.1 + 30386 0.66 0.747219
Target:  5'- -gCCGGGCGcgUgcgacggUGGCgCGCGGCUCGg -3'
miRNA:   3'- caGGUCUGCuaGa------GCCG-GUGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 109237 0.66 0.747219
Target:  5'- -gCCGGGCGGgg-CGGaauCCugGGCCCc -3'
miRNA:   3'- caGGUCUGCUagaGCC---GGugCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 98115 0.66 0.747219
Target:  5'- cGUCCAaaacucGAUGcgCaUCaGCuCGCGGCCCGg -3'
miRNA:   3'- -CAGGU------CUGCuaG-AGcCG-GUGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 122530 0.66 0.737825
Target:  5'- cGUCCGGcCGugggUGGCCACguccaccuuGGCCCGu -3'
miRNA:   3'- -CAGGUCuGCuagaGCCGGUG---------CCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 5077 0.66 0.737825
Target:  5'- gGUCUGGGCucGGggUgGGCgGCGGCCCGu -3'
miRNA:   3'- -CAGGUCUG--CUagAgCCGgUGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 151272 0.66 0.737825
Target:  5'- -gCCGGGCGGUgggGGCCGgGGCCgGg -3'
miRNA:   3'- caGGUCUGCUAgagCCGGUgCCGGgC- -5'
5590 5' -60.2 NC_001806.1 + 2721 0.66 0.728345
Target:  5'- -cCCAGGgGGUCggGGCCcucgGCGGgCCGg -3'
miRNA:   3'- caGGUCUgCUAGagCCGG----UGCCgGGC- -5'
5590 5' -60.2 NC_001806.1 + 143413 0.66 0.728345
Target:  5'- gGUCgCGGcucuuACGAg--CGGCC-CGGCCCGc -3'
miRNA:   3'- -CAG-GUC-----UGCUagaGCCGGuGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 38285 0.66 0.722619
Target:  5'- -gCCGGGCGAgcggcgucgaguaUCGGCUcCGGUCCGu -3'
miRNA:   3'- caGGUCUGCUag-----------AGCCGGuGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 52903 0.66 0.719747
Target:  5'- cGUCCGGcGCGcGUCucuggggagccucgaUCGGCCACGGguguggggacccgcCCCGg -3'
miRNA:   3'- -CAGGUC-UGC-UAG---------------AGCCGGUGCC--------------GGGC- -5'
5590 5' -60.2 NC_001806.1 + 33743 0.66 0.718788
Target:  5'- -gCCGGcucuGCGGUgUCGGCgGCGGCUgCGg -3'
miRNA:   3'- caGGUC----UGCUAgAGCCGgUGCCGG-GC- -5'
5590 5' -60.2 NC_001806.1 + 33115 0.67 0.709161
Target:  5'- gGUCCGGACGGggCcCGgaccGCCGCGGUCgGg -3'
miRNA:   3'- -CAGGUCUGCUa-GaGC----CGGUGCCGGgC- -5'
5590 5' -60.2 NC_001806.1 + 117871 0.67 0.699473
Target:  5'- --gCGGGCGAUgUCGGCgGgGGCCg- -3'
miRNA:   3'- cagGUCUGCUAgAGCCGgUgCCGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.