Results 1 - 20 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5599 | 5' | -60.4 | NC_001806.1 | + | 37625 | 0.66 | 0.771199 |
Target: 5'- aUUCGCGGCgggaaACGGCUGcCCCccaaaGGGg -3' miRNA: 3'- gAAGCGCCGg----UGCCGGUuGGGca---CCC- -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 151578 | 0.66 | 0.771199 |
Target: 5'- -aUgGCGGCgGCGGCgGGCCa-UGGa -3' miRNA: 3'- gaAgCGCCGgUGCCGgUUGGgcACCc -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 119208 | 0.66 | 0.771199 |
Target: 5'- --cCGCgaaggaGGCUGCGGCCcACCUGUccauGGGu -3' miRNA: 3'- gaaGCG------CCGGUGCCGGuUGGGCA----CCC- -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 107043 | 0.66 | 0.771199 |
Target: 5'- --gCGgGGCCGCgGGCUGugCCGcGGa -3' miRNA: 3'- gaaGCgCCGGUG-CCGGUugGGCaCCc -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 119905 | 0.66 | 0.771199 |
Target: 5'- --gCGCuGGCCACGGCCcugaCCGaGGc -3' miRNA: 3'- gaaGCG-CCGGUGCCGGuug-GGCaCCc -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 72119 | 0.66 | 0.762124 |
Target: 5'- --cCGCacaCACGuucuucGCCGGCCCGUGGGc -3' miRNA: 3'- gaaGCGccgGUGC------CGGUUGGGCACCC- -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 146065 | 0.66 | 0.762124 |
Target: 5'- -gUgGCGGCCAgaGGCCAGgucagUCCGggcGGGc -3' miRNA: 3'- gaAgCGCCGGUg-CCGGUU-----GGGCa--CCC- -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 93107 | 0.66 | 0.762124 |
Target: 5'- uUUCaggcCGGgaaCugGGCCAGCCUGaUGGGc -3' miRNA: 3'- gAAGc---GCCg--GugCCGGUUGGGC-ACCC- -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 65643 | 0.66 | 0.762124 |
Target: 5'- ---aGgGGCCccgGCGGCCucCCCcUGGGu -3' miRNA: 3'- gaagCgCCGG---UGCCGGuuGGGcACCC- -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 59978 | 0.66 | 0.762124 |
Target: 5'- --gCGCGGCaccucucUGGCCucgggGACCCG-GGGg -3' miRNA: 3'- gaaGCGCCGgu-----GCCGG-----UUGGGCaCCC- -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 46432 | 0.66 | 0.762124 |
Target: 5'- --cCGCGGUCgggcgccugGCGGCCAugcauGCCCGgaUGGcGg -3' miRNA: 3'- gaaGCGCCGG---------UGCCGGU-----UGGGC--ACC-C- -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 147659 | 0.66 | 0.762124 |
Target: 5'- --gCGgGGCgGgCGGCCGGCuCCGccccgGGGg -3' miRNA: 3'- gaaGCgCCGgU-GCCGGUUG-GGCa----CCC- -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 144282 | 0.66 | 0.755708 |
Target: 5'- --aUGUGGCCGCGGgccagcagacggcCCGcgacaccccccccccGCCCGUGuGGg -3' miRNA: 3'- gaaGCGCCGGUGCC-------------GGU---------------UGGGCAC-CC- -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 88983 | 0.66 | 0.752943 |
Target: 5'- --gCGCGagcGCCGCGGCCAgaagccGCCCGa--- -3' miRNA: 3'- gaaGCGC---CGGUGCCGGU------UGGGCaccc -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 93870 | 0.66 | 0.752943 |
Target: 5'- -cUCcCGGCUugccgguCGGCgGGCCCGcGGGa -3' miRNA: 3'- gaAGcGCCGGu------GCCGgUUGGGCaCCC- -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 23582 | 0.66 | 0.752943 |
Target: 5'- ---gGCGGCgccCGCGGCCGccGCCC-UGGa -3' miRNA: 3'- gaagCGCCG---GUGCCGGU--UGGGcACCc -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 66511 | 0.66 | 0.752943 |
Target: 5'- --aCGCGGgguuuggggauUgGCGGCCAgGCCCGcgagGGGg -3' miRNA: 3'- gaaGCGCC-----------GgUGCCGGU-UGGGCa---CCC- -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 64770 | 0.66 | 0.743663 |
Target: 5'- ---aGCGcGCCACGGCCu-CCgCGUucucGGGc -3' miRNA: 3'- gaagCGC-CGGUGCCGGuuGG-GCA----CCC- -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 134969 | 0.66 | 0.743663 |
Target: 5'- -aUCGuCGGCCgucgcgGCGGCCAuCCCGg--- -3' miRNA: 3'- gaAGC-GCCGG------UGCCGGUuGGGCaccc -5' |
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5599 | 5' | -60.4 | NC_001806.1 | + | 3094 | 0.66 | 0.743663 |
Target: 5'- ---gGCGGCgGCGGCCGcggaGCUCGgcaggcgcGGGu -3' miRNA: 3'- gaagCGCCGgUGCCGGU----UGGGCa-------CCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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