miRNA display CGI


Results 21 - 40 of 211 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 3' -53.6 NC_001806.1 + 133649 0.69 0.881839
Target:  5'- gCGGCGccuuGCUGGACGCAgAgcacuacugGCGGCGCg -3'
miRNA:   3'- -GUUGUac--CGGCUUGCGUgU---------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 133480 0.67 0.950047
Target:  5'- aCGGCAUGcguGCCGGaggaggACGCACucACGGCcCg -3'
miRNA:   3'- -GUUGUAC---CGGCU------UGCGUGu-UGCCGcG- -5'
5602 3' -53.6 NC_001806.1 + 132845 0.67 0.931213
Target:  5'- -----cGGCCGucgggccCGuCugGACGGCGCg -3'
miRNA:   3'- guuguaCCGGCuu-----GC-GugUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 132740 0.67 0.941117
Target:  5'- cCGGCGUGGCCucggcggcagccGGAUGCcuccuGCccGCGGUGCg -3'
miRNA:   3'- -GUUGUACCGG------------CUUGCG-----UGu-UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 132155 0.72 0.762729
Target:  5'- -cGCGUuGCCGAgcaucccgACGCGCGGCuGGCGUg -3'
miRNA:   3'- guUGUAcCGGCU--------UGCGUGUUG-CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 131451 0.76 0.498714
Target:  5'- -uACGUGGUCGucCGCGgacCGGCGGCGCu -3'
miRNA:   3'- guUGUACCGGCuuGCGU---GUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 130814 0.69 0.888847
Target:  5'- gCAcCAUGGCCGcGCGCcuGCAuugggacuCGGCGg -3'
miRNA:   3'- -GUuGUACCGGCuUGCG--UGUu-------GCCGCg -5'
5602 3' -53.6 NC_001806.1 + 128914 0.68 0.920327
Target:  5'- -----gGGCCGGGCGUcccauuggggACGACGaGUGCg -3'
miRNA:   3'- guuguaCCGGCUUGCG----------UGUUGC-CGCG- -5'
5602 3' -53.6 NC_001806.1 + 128522 0.71 0.781747
Target:  5'- gCGGCAUGGCCaugcGGGcCGCAgccaGACGGCGg -3'
miRNA:   3'- -GUUGUACCGG----CUU-GCGUg---UUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 128288 0.67 0.945703
Target:  5'- gAGCcgGGCCGAcgACGCGaugauggguCGGgGCc -3'
miRNA:   3'- gUUGuaCCGGCU--UGCGUguu------GCCgCG- -5'
5602 3' -53.6 NC_001806.1 + 128230 0.67 0.939694
Target:  5'- gCGGCGUcGGCCGugcacaggaaGACGCccaacaGCAaggcguuugucagcACGGCGCg -3'
miRNA:   3'- -GUUGUA-CCGGC----------UUGCG------UGU--------------UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 126142 0.73 0.692919
Target:  5'- nGGCGaGGCCG-GCGCcgACAcGCGGCGCu -3'
miRNA:   3'- gUUGUaCCGGCuUGCG--UGU-UGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 126119 0.76 0.498714
Target:  5'- -uGCGUgGGCCGcGCGgACGACGGCGg -3'
miRNA:   3'- guUGUA-CCGGCuUGCgUGUUGCCGCg -5'
5602 3' -53.6 NC_001806.1 + 126033 0.72 0.753037
Target:  5'- cCAGCcugcGGCCGGAUGUACAGucuuCGGCGg -3'
miRNA:   3'- -GUUGua--CCGGCUUGCGUGUU----GCCGCg -5'
5602 3' -53.6 NC_001806.1 + 122446 0.69 0.867143
Target:  5'- -cGCGUGGuccCCGAGgaGCACGGCGGC-Ca -3'
miRNA:   3'- guUGUACC---GGCUUg-CGUGUUGCCGcG- -5'
5602 3' -53.6 NC_001806.1 + 122361 0.67 0.936288
Target:  5'- uGGCGcgcUGGCgGAagugGCGCACGGCcGCGUc -3'
miRNA:   3'- gUUGU---ACCGgCU----UGCGUGUUGcCGCG- -5'
5602 3' -53.6 NC_001806.1 + 121350 0.73 0.703125
Target:  5'- gAGCcaGUGGUCGGcgaGCugGAUGGCGCg -3'
miRNA:   3'- gUUG--UACCGGCUug-CGugUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 120741 0.71 0.800211
Target:  5'- -----cGGCCGGucuCGC-UAGCGGCGCc -3'
miRNA:   3'- guuguaCCGGCUu--GCGuGUUGCCGCG- -5'
5602 3' -53.6 NC_001806.1 + 119478 0.69 0.881839
Target:  5'- gAGCGcGGaCCGGGCGUGCGGCcuguGGCGUu -3'
miRNA:   3'- gUUGUaCC-GGCUUGCGUGUUG----CCGCG- -5'
5602 3' -53.6 NC_001806.1 + 119123 0.67 0.931213
Target:  5'- -uACGcGGCCGAcagcACGCGCAucauGCGCg -3'
miRNA:   3'- guUGUaCCGGCU----UGCGUGUugc-CGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.