miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5610 3' -67.9 NC_001806.1 + 24705 0.65 0.408245
Target:  5'- gGUGGCgcgGGCCgcggagggacuuuuGCGCCCG-CGC-CCu -3'
miRNA:   3'- aCGCCGa--CCGG--------------CGCGGGCgGCGaGGc -5'
5610 3' -67.9 NC_001806.1 + 69147 0.66 0.402659
Target:  5'- gUGCGGacggacgUGGCCGUGUUugaucccgacgUGCCGUUCCu -3'
miRNA:   3'- -ACGCCg------ACCGGCGCGG-----------GCGGCGAGGc -5'
5610 3' -67.9 NC_001806.1 + 22977 0.66 0.402659
Target:  5'- cUGCGcGCgUGGCUGCGCgaGCUGCggUUCGu -3'
miRNA:   3'- -ACGC-CG-ACCGGCGCGggCGGCG--AGGC- -5'
5610 3' -67.9 NC_001806.1 + 128520 0.66 0.402659
Target:  5'- gUGCGGCaUGGCCaUGCggGCCGCagCCa -3'
miRNA:   3'- -ACGCCG-ACCGGcGCGggCGGCGa-GGc -5'
5610 3' -67.9 NC_001806.1 + 151116 0.66 0.402659
Target:  5'- cGCGGggGGCUccgGCGCCCccuccCCGC-CCGc -3'
miRNA:   3'- aCGCCgaCCGG---CGCGGGc----GGCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 26556 0.66 0.402659
Target:  5'- cGCuGCU-GCUGCGCCaGUgGCUCCa -3'
miRNA:   3'- aCGcCGAcCGGCGCGGgCGgCGAGGc -5'
5610 3' -67.9 NC_001806.1 + 2985 0.66 0.394764
Target:  5'- cGCGGCgcggggaggcGGCgGCGgCCGCCaGCgcgUCGg -3'
miRNA:   3'- aCGCCGa---------CCGgCGCgGGCGG-CGa--GGC- -5'
5610 3' -67.9 NC_001806.1 + 20309 0.66 0.394764
Target:  5'- uUGgGGC-GGUCcCGCCCGCCGg-CCa -3'
miRNA:   3'- -ACgCCGaCCGGcGCGGGCGGCgaGGc -5'
5610 3' -67.9 NC_001806.1 + 89529 0.66 0.394764
Target:  5'- aGCuGCUGcGCgGCGCCCcgGCCgGCggcCCGg -3'
miRNA:   3'- aCGcCGAC-CGgCGCGGG--CGG-CGa--GGC- -5'
5610 3' -67.9 NC_001806.1 + 107018 0.66 0.394764
Target:  5'- cGCGcGCUuGCCGgGUUgGCCGC-CCGc -3'
miRNA:   3'- aCGC-CGAcCGGCgCGGgCGGCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 76310 0.66 0.393198
Target:  5'- cGCGGUgcgcaacgacccGGCgGCGgCCGCCGagcuugUCCGg -3'
miRNA:   3'- aCGCCGa-----------CCGgCGCgGGCGGCg-----AGGC- -5'
5610 3' -67.9 NC_001806.1 + 1936 0.66 0.386971
Target:  5'- gUGCGGCgcaGGUCcCGCgCCGCCGg-CCa -3'
miRNA:   3'- -ACGCCGa--CCGGcGCG-GGCGGCgaGGc -5'
5610 3' -67.9 NC_001806.1 + 24907 0.66 0.386971
Target:  5'- gGCgGGCuUGGCCaCGCCC-CCGCggCGg -3'
miRNA:   3'- aCG-CCG-ACCGGcGCGGGcGGCGagGC- -5'
5610 3' -67.9 NC_001806.1 + 134981 0.66 0.386971
Target:  5'- cGCGGC-GGCCaucccgGUGCCCGaugcccCCGCccuggUCCGg -3'
miRNA:   3'- aCGCCGaCCGG------CGCGGGC------GGCG-----AGGC- -5'
5610 3' -67.9 NC_001806.1 + 140678 0.66 0.386971
Target:  5'- uUGuuGCUGcGCgGCGCCCgcguGCCGCgCUGg -3'
miRNA:   3'- -ACgcCGAC-CGgCGCGGG----CGGCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 70485 0.66 0.386971
Target:  5'- aUGCGG-UGGUCGgggacaCGCCCGaCCGC-CUGg -3'
miRNA:   3'- -ACGCCgACCGGC------GCGGGC-GGCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 2213 0.66 0.379279
Target:  5'- cGCccaGGC-GGCCGUGUCCGgcCCGCacagCCGg -3'
miRNA:   3'- aCG---CCGaCCGGCGCGGGC--GGCGa---GGC- -5'
5610 3' -67.9 NC_001806.1 + 1408 0.66 0.379279
Target:  5'- cUGCGGCccgUGGCCGagGCCCagcgaaucccggGCgGCgCCGg -3'
miRNA:   3'- -ACGCCG---ACCGGCg-CGGG------------CGgCGaGGC- -5'
5610 3' -67.9 NC_001806.1 + 2546 0.66 0.379279
Target:  5'- cGCGGCgaucgaGGCCaGgGCCCGCgGgUCa- -3'
miRNA:   3'- aCGCCGa-----CCGG-CgCGGGCGgCgAGgc -5'
5610 3' -67.9 NC_001806.1 + 96506 0.66 0.378515
Target:  5'- gGCGGCgaacgggGGCCcUGCCacuccggCGCCGC-CCGc -3'
miRNA:   3'- aCGCCGa------CCGGcGCGG-------GCGGCGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.